RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 ARF4P18085 180 aaPredicted RBP12.43□□□□□ -0.42
CDH3-208ENST00000569036 ARPP19P56211 112 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 PTPAQ15257 358 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 PCBP1Q15365 356 aaKnown RBP eCLIP12.43□□□□□ -0.42
CDH3-208ENST00000569036 AMHR2Q16671 573 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 PEAR1Q5VY43 1037 aaPredicted RBP12.43□□□□□ -0.42
CDH3-208ENST00000569036 LPCAT2Q7L5N7 544 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 TMPRSS7Q7RTY8 843 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 RASSF3Q86WH2 238 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 CDR2LQ86X02 465 aaPredicted RBP12.43□□□□□ -0.42
CDH3-208ENST00000569036 MARCH9Q86YJ5 346 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 RAB11FIP4Q86YS3 637 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 TMEFF1Q8IYR6 380 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 BPIFB1Q8TDL5 484 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 SLC7A3Q8WY07 619 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 RIT2Q99578 217 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 IL25Q9H293 177 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 CXCL16Q9H2A7 254 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 PILRBQ9UKJ0 227 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 SLC6A14Q9UN76 642 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 UBR5O95071 2799 aaPredicted RBP12.43□□□□□ -0.42
CDH3-208ENST00000569036 DOPEY2Q9Y3R5 2298 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 OTOL1A6NHN0 477 aaPredicted RBP12.42□□□□□ -0.42
CDH3-208ENST00000569036 E7EWF7 191 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 B4GALT5O43286 388 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 WISP1O95388 367 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 THP07101 528 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 DRD1P21728 446 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 NPEPPSP55786 919 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 GFPT1Q06210 699 aaPredicted RBP12.42□□□□□ -0.42
CDH3-208ENST00000569036 NCBP1Q09161 790 aaKnown RBP12.42□□□□□ -0.42
CDH3-208ENST00000569036 FBXO43Q4G163 708 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 ANKRD45Q5TZF3 282 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 NAIF1Q69YI7 327 aaPredicted RBP12.42□□□□□ -0.42
CDH3-208ENST00000569036 ANO7Q6IWH7 933 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 SLC27A1Q6PCB7 646 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 CD300LGQ6UXG3 332 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 MIER3Q7Z3K6 550 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 TMC8Q8IU68 726 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 NAXDQ8IW45 347 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 MB21D2Q8IYB1 491 aaPredicted RBP12.42□□□□□ -0.42
CDH3-208ENST00000569036 FAM181AQ8N9Y4 354 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 ZNF579Q8NAF0 562 aaKnown RBP12.42□□□□□ -0.42
CDH3-208ENST00000569036 RDM1Q8NG50 284 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 GJA10Q969M2 543 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 CNOT6LQ96LI5 555 aaKnown RBP12.42□□□□□ -0.42
CDH3-208ENST00000569036 FNBP1Q96RU3 617 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 TEKT3Q9BXF9 490 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 LRRC3Q9BY71 257 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 GLT8D2Q9H1C3 349 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 DHX33Q9H6R0 707 aaKnown RBP12.42□□□□□ -0.42
CDH3-208ENST00000569036 CAPN10Q9HC96 672 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 HPS4Q9NQG7 708 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 BMP2KQ9NSY1 1161 aaPredicted RBP12.42□□□□□ -0.42
CDH3-208ENST00000569036 DNAAF2Q9NVR5 837 aaKnown RBP12.42□□□□□ -0.42
CDH3-208ENST00000569036 CEP192Q8TEP8 1941 aa12.42□□□□□ -0.42
CDH3-208ENST00000569036 HELZP42694 1942 aaKnown RBP12.41□□□□□ -0.42
CDH3-208ENST00000569036 INO80B-WBP1J3KQ70 363 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 ADAMTS3O15072 1205 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 B3GAT3O94766 335 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 U2AF2P26368 475 aaKnown RBP eCLIP12.41□□□□□ -0.42
CDH3-208ENST00000569036 CIITAP33076 1130 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 HOXD12P35452 270 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 DPP6P42658 865 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 MCM2P49736 904 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 PTENP60484 403 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 CAMK2BQ13554 666 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 BECN1Q14457 450 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 LRCH2Q5VUJ6 765 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 LYSMD4Q5XG99 296 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 TPGS2Q68CL5 300 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 NFXL1Q6ZNB6 911 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 FERMT3Q86UX7 667 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 MDGA1Q8NFP4 955 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 OLIG1Q8TAK6 271 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 EZH1Q92800 747 aaPredicted RBP12.41□□□□□ -0.42
CDH3-208ENST00000569036 SLC5A5Q92911 643 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 BARHL2Q9NY43 387 aa12.41□□□□□ -0.42
CDH3-208ENST00000569036 U3KPZ7 1027 aaPredicted RBP12.41□□□□□ -0.42
CDH3-208ENST00000569036 TEX51A0A1B0GUA7 166 aa12.4□□□□□ -0.42
CDH3-208ENST00000569036 CCDC69A6NI79 296 aa12.4□□□□□ -0.42
CDH3-208ENST00000569036 GJB3O75712 270 aa12.4□□□□□ -0.42
CDH3-208ENST00000569036 SERPINF2P08697 491 aa12.4□□□□□ -0.42
CDH3-208ENST00000569036 ITPKAP23677 461 aa12.4□□□□□ -0.42
CDH3-208ENST00000569036 BRCC3P46736 316 aa12.4□□□□□ -0.42
CDH3-208ENST00000569036 GALK1P51570 392 aa12.4□□□□□ -0.42
CDH3-208ENST00000569036 MBTD1Q05BQ5 628 aa12.4□□□□□ -0.42
CDH3-208ENST00000569036 SLC14A1Q13336 389 aa12.4□□□□□ -0.42
CDH3-208ENST00000569036 RUNX3Q13761 415 aa12.4□□□□□ -0.42
CDH3-208ENST00000569036 DUOXA1Q1HG43 343 aa12.4□□□□□ -0.42
CDH3-208ENST00000569036 C8orf34Q49A92 452 aa12.4□□□□□ -0.42
CDH3-208ENST00000569036 GLRX5Q86SX6 157 aa12.4□□□□□ -0.42
CDH3-208ENST00000569036 C3orf58Q8NDZ4 430 aa12.4□□□□□ -0.42
CDH3-208ENST00000569036 CEP76Q8TAP6 659 aa12.4□□□□□ -0.42
CDH3-208ENST00000569036 RLN3Q8WXF3 142 aa12.4□□□□□ -0.42
CDH3-208ENST00000569036 POLR3CQ9BUI4 534 aaPredicted RBP12.4□□□□□ -0.42
CDH3-208ENST00000569036 GKN1Q9NS71 199 aa12.4□□□□□ -0.42
CDH3-208ENST00000569036 KIAA1522Q9P206 1035 aaPredicted RBP12.4□□□□□ -0.42
CDH3-208ENST00000569036 TPCN1Q9ULQ1 816 aa12.4□□□□□ -0.42
CDH3-208ENST00000569036 TRIP11Q15643 1979 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms