RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 NFX1Q12986 1120 aaKnown RBP15.32■□□□□ 0.04
VPS35-210ENST00000568784 MKRN3Q13064 507 aaKnown RBP15.32■□□□□ 0.04
VPS35-210ENST00000568784 PTK6Q13882 451 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 SIX1Q15475 284 aaPredicted RBP15.32■□□□□ 0.04
VPS35-210ENST00000568784 DNAJC24Q6P3W2 148 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 NLRP9Q7RTR0 991 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 ZBTB33Q86T24 672 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 ZC3H18Q86VM9 953 aaKnown RBP15.32■□□□□ 0.04
VPS35-210ENST00000568784 TEX2Q8IWB9 1127 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 PDCD7Q8N8D1 485 aaKnown RBP15.32■□□□□ 0.04
VPS35-210ENST00000568784 CERKQ8TCT0 537 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 CYTH2Q99418 400 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 MRPL47Q9HD33 250 aaKnown RBP15.32■□□□□ 0.04
VPS35-210ENST00000568784 ZMYND8Q9ULU4 1186 aaPredicted RBP15.32■□□□□ 0.04
VPS35-210ENST00000568784 COL22A1Q8NFW1 1626 aaPredicted RBP15.32■□□□□ 0.04
VPS35-210ENST00000568784 P4HA2O15460 535 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 ATP9AO75110 1047 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 ADRA1DP25100 572 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 CALRP27797 417 aaKnown RBP15.32■□□□□ 0.04
VPS35-210ENST00000568784 SARNPP82979 210 aaKnown RBP15.32■□□□□ 0.04
VPS35-210ENST00000568784 TKFCQ3LXA3 575 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 C1orf220Q5T0J3 134 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 MFSD7Q6UXD7 560 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 CCDC125Q86Z20 511 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 MAGEC3Q8TD91 643 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 HELQQ8TDG4 1101 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 CCDC195A0A1B0GUA6 201 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 VIL1P09327 827 aaKnown RBP15.31■□□□□ 0.04
VPS35-210ENST00000568784 RPL7AP62424 266 aaKnown RBP15.31■□□□□ 0.04
VPS35-210ENST00000568784 MGAT5Q09328 741 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 ALCAMQ13740 583 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 EFTUD2Q15029 972 aaKnown RBP eCLIP15.31■□□□□ 0.04
VPS35-210ENST00000568784 CYP4A22Q5TCH4 519 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 CCDC62Q6P9F0 684 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 SLC9A9Q8IVB4 645 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 ARMC2Q8NEN0 867 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 RIT2Q99578 217 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 TBC1D10AQ9BXI6 508 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 CALN1Q9BXU9 219 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 KIAA1586Q9HCI6 787 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 SPATS2LQ9NUQ6 558 aaKnown RBP15.31■□□□□ 0.04
VPS35-210ENST00000568784 PCDHB2Q9Y5E7 798 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 GYG2O15488 501 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 ZBED4O75132 1171 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 ADSSP30520 456 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 SLC1A5Q15758 541 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 GPD1LQ8N335 351 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 PSPC1Q8WXF1 523 aaKnown RBP15.31■□□□□ 0.04
VPS35-210ENST00000568784 TMEM143Q96AN5 459 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 MARCOQ9UEW3 520 aaPredicted RBP15.31■□□□□ 0.04
VPS35-210ENST00000568784 MAP3K6O95382 1288 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 TCF4P15884 667 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 CD101Q93033 1021 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 TMEM109Q9BVC6 243 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 COL20A1Q9P218 1284 aa15.31■□□□□ 0.04
VPS35-210ENST00000568784 BHMG1C9JSJ3 638 aaPredicted RBP15.3■□□□□ 0.04
VPS35-210ENST00000568784 PROSCO94903 275 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 LUC7L3O95232 432 aaKnown RBP15.3■□□□□ 0.04
VPS35-210ENST00000568784 KRT19P08727 400 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 PSMC5P62195 406 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 SEPT12Q8IYM1 358 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 PPP1R14CQ8TAE6 165 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 GRAMD1AQ96CP6 724 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 CHKBQ9Y259 395 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 C2orf71A6NGG8 1288 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 MT-ND3P03897 115 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 HOXA10P31260 410 aaPredicted RBP15.3■□□□□ 0.04
VPS35-210ENST00000568784 POLE2P56282 527 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 RIPK1Q13546 671 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 TFDP1Q14186 410 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 VPS72Q15906 364 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 C3orf62Q6ZUJ4 267 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 ZBTB45Q96K62 511 aaPredicted RBP15.3■□□□□ 0.04
VPS35-210ENST00000568784 EBF2Q9HAK2 575 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 NXF1Q9UBU9 619 aaKnown RBP15.3■□□□□ 0.04
VPS35-210ENST00000568784 CHMP2BQ9UQN3 213 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 NHSL1Q5SYE7 1610 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 TJP3O95049 919 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 SLC8A3P57103 927 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 BPIFB4P59827 614 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 CYP1B1Q16678 543 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 RBBP8NLQ8NC74 664 aaPredicted RBP15.3■□□□□ 0.04
VPS35-210ENST00000568784 PPFIBP2Q8ND30 876 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 BATF3Q9NR55 127 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 DLGAP2Q9P1A6 1054 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 IVNS1ABPQ9Y6Y0 642 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 MROH7Q68CQ1 1323 aa15.3■□□□□ 0.04
VPS35-210ENST00000568784 WDR64B1ANS9 1081 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 F8VP50 259 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 H0YIN7 160 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 PIK3R2O00459 728 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 HAUS5O94927 633 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 ESRRAP11474 423 aaPredicted RBP15.29■□□□□ 0.04
VPS35-210ENST00000568784 CTCFP49711 727 aaPredicted RBP15.29■□□□□ 0.04
VPS35-210ENST00000568784 RPS6P62753 249 aaKnown RBP15.29■□□□□ 0.04
VPS35-210ENST00000568784 HIF1AQ16665 826 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 STRIP1Q5VSL9 837 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 TATDN1Q6P1N9 297 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 FAM13CQ8NE31 585 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 DEPTORQ8TB45 409 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms