RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 FERMT2Q96AC1 680 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 TMEM176AQ96HP8 235 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 NAF1Q96HR8 494 aaKnown RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 DYDC2Q96IM9 177 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 CDHR1Q96JP9 859 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 TTC14Q96N46 770 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 ADOQ96SZ5 270 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 NAP1L3Q99457 506 aaPredicted RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 MAP3K14Q99558 947 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 TCHPQ9BT92 498 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 MYL10Q9BUA6 226 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 OSBPL10Q9BXB5 764 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 KRTAP4-2Q9BYR5 136 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 KLC2Q9H0B6 622 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 ALDH8A1Q9H2A2 487 aaPredicted RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 TAOK3Q9H2K8 898 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 TTC12Q9H892 705 aaPredicted RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 ZWILCHQ9H900 591 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 CD248Q9HCU0 757 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 KCMF1Q9P0J7 381 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 CHPF2Q9P2E5 772 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 MSRAQ9UJ68 235 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 EXOC6BQ9Y2D4 811 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 NOSIPQ9Y314 301 aaKnown RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 RBM8AQ9Y5S9 174 aaKnown RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 CCDC171Q6TFL3 1326 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 TMEM94Q12767 1356 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 RAB3GAP2Q9H2M9 1393 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 KIF15Q9NS87 1388 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 TCOF1Q13428 1488 aaKnown RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 ZNF608Q9ULD9 1512 aaPredicted RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 REREQ9P2R6 1566 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 GOLGA6L10A0A0M3HER8 536 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 LCHNA4D1U4 455 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 PATE3B3GLJ2 98 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 POLR3GO15318 223 aaPredicted RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 TTI1O43156 1089 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 DAPK3O43293 454 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 SYNJ1O43426 1573 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 SGTAO43765 313 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 ZBED4O75132 1171 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 PCDH8O95206 1070 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 FKBP9O95302 570 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 FGFR1OPO95684 399 aaKnown RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 MBD3O95983 291 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 PENKP01210 267 aaPredicted RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 PDGFRBP09619 1106 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 LSP1P33241 339 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 TCF7P36402 384 aaPredicted RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 SELENOPP49908 381 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 CLCN2P51788 898 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 BCAR1P56945 870 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 SESN2P58004 480 aaPredicted RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 ANTXR2P58335 489 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 ATP2C1P98194 919 aaPredicted RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 NFKB2Q00653 900 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 PPIDQ08752 370 aaKnown RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 DYNC1I2Q13409 638 aaKnown RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 TRIM29Q14134 588 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 SLMAPQ14BN4 828 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 NAA25Q14CX7 972 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 PLCB4Q15147 1175 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 RASA2Q15283 850 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 DDB1Q16531 1140 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 ZXDCQ2QGD7 858 aaPredicted RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 CCDC57Q2TAC2 916 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 MUM1Q2TAK8 710 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 USH1GQ495M9 461 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 SMUG1Q53HV7 270 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 PLEKHG4Q58EX7 1191 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 GPRASP1Q5JY77 1395 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 EFCAB2Q5VUJ9 269 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 THOC7Q6I9Y2 204 aaKnown RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 TMCO3Q6UWJ1 677 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 CCBE1Q6UXH8 406 aaPredicted RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 UNQ6494/PRO21346Q6UXR6 183 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 DBX2Q6ZNG2 339 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 ESPNLQ6ZVH7 1005 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 FKBP9P1Q75LS8 142 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 HOOK3Q86VS8 718 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 CCAR1Q8IX12 1150 aaKnown RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 CEP57L1Q8IYX8 460 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 FUKQ8N0W3 1084 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 NDUFAF2Q8N183 169 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 GALNT15Q8N3T1 639 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 SMC1BQ8NDV3 1235 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 KLHDC4Q8TBB5 520 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 Q8TCH9 128 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 SH3RF3Q8TEJ3 882 aaPredicted RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 HPS3Q969F9 1004 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 GFM2Q969S9 779 aaKnown RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 PPP1R14BQ96C90 147 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 LRRC45Q96CN5 670 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 GCC1Q96CN9 775 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 CLIP3Q96DZ5 547 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 SPDL1Q96EA4 605 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 HOOK2Q96ED9 719 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 TMX3Q96JJ7 454 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 RPL10LQ96L21 214 aaKnown RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 CCDC7Q96M83 1385 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms