RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 FAM189A1O60320 539 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 OAZ2O95190 189 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 CYP3A5P20815 502 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 TNFSF9P41273 254 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 AARSP49588 968 aaKnown RBP eCLIP16.25■□□□□ 0.19
CLN3-236ENST00000568558 EPHA5P54756 1037 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 PPP2R3AQ06190 1150 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 GRM2Q14416 872 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 IQCEQ6IPM2 695 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 ZNF852Q6ZMS4 543 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 SUMF1Q8NBK3 374 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 LEMD2Q8NC56 503 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 LRRC15Q8TF66 581 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 RUBCNQ92622 972 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 SMARCD2Q92925 531 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 KIF12Q96FN5 646 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 AK8Q96MA6 479 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 REEP2Q9BRK0 252 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 BRD9Q9H8M2 597 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 MRPS17Q9Y2R5 130 aaKnown RBP16.25■□□□□ 0.19
CLN3-236ENST00000568558 DENND4CQ5VZ89 1909 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 KIF26AQ9ULI4 1882 aaPredicted RBP16.25■□□□□ 0.19
CLN3-236ENST00000568558 HNRNPDLO14979 420 aaKnown RBP16.24■□□□□ 0.19
CLN3-236ENST00000568558 NCAM2O15394 837 aa16.24■□□□□ 0.19
CLN3-236ENST00000568558 KINO60870 393 aaKnown RBP16.24■□□□□ 0.19
CLN3-236ENST00000568558 CD2BP2O95400 341 aaKnown RBP16.24■□□□□ 0.19
CLN3-236ENST00000568558 VNN2O95498 520 aa16.24■□□□□ 0.19
CLN3-236ENST00000568558 PIGRP01833 764 aa16.24■□□□□ 0.19
CLN3-236ENST00000568558 RPS9P46781 194 aaKnown RBP16.24■□□□□ 0.19
CLN3-236ENST00000568558 LIG4P49917 911 aa16.24■□□□□ 0.19
CLN3-236ENST00000568558 FZD5Q13467 585 aa16.24■□□□□ 0.19
CLN3-236ENST00000568558 ENOX2Q16206 610 aaKnown RBP16.24■□□□□ 0.19
CLN3-236ENST00000568558 KYAT1Q16773 422 aa16.24■□□□□ 0.19
CLN3-236ENST00000568558 VITQ6UXI7 678 aa16.24■□□□□ 0.19
CLN3-236ENST00000568558 KIAA2013Q8IYS2 634 aa16.24■□□□□ 0.19
CLN3-236ENST00000568558 ZSWIM3Q96MP5 696 aa16.24■□□□□ 0.19
CLN3-236ENST00000568558 TRMT61BQ9BVS5 477 aaKnown RBP16.24■□□□□ 0.19
CLN3-236ENST00000568558 OXCT2Q9BYC2 517 aaPredicted RBP16.24■□□□□ 0.19
CLN3-236ENST00000568558 ASAH2Q9NR71 780 aa16.24■□□□□ 0.19
CLN3-236ENST00000568558 YIPF1Q9Y548 306 aa16.24■□□□□ 0.19
CLN3-236ENST00000568558 TIMM13Q9Y5L4 95 aaPredicted RBP16.24■□□□□ 0.19
CLN3-236ENST00000568558 OBSL1O75147 1896 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 CEP250Q9BV73 2442 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 LACTBL1A8MY62 500 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 SPTLC1O15269 473 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 OGTO15294 1046 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 XPOTO43592 962 aaKnown RBP16.23■□□□□ 0.19
CLN3-236ENST00000568558 ADRB2P07550 413 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 OR4Q2P0C623 313 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 MYL4P12829 197 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 GJA1P17302 382 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 PSMC3P17980 439 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 SCP2P22307 547 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 GUCY2FP51841 1108 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 ZNF131P52739 623 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 CSTF1Q05048 431 aaKnown RBP16.23■□□□□ 0.19
CLN3-236ENST00000568558 GPBP1Q86WP2 473 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 ZNF687Q8N1G0 1237 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 IRF7Q92985 503 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 CALML4Q96GE6 196 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 BORCS6Q96GS4 357 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 HINFPQ9BQA5 517 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 CRISPLD1Q9H336 500 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 ZNF334Q9HCZ1 680 aaPredicted RBP16.23■□□□□ 0.19
CLN3-236ENST00000568558 TRPV5Q9NQA5 729 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 BLOC1S4Q9NUP1 217 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 TBX20Q9UMR3 447 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 PCDHGA2Q9Y5H1 932 aa16.23■□□□□ 0.19
CLN3-236ENST00000568558 NCANO14594 1321 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 OR6C75A6NL08 312 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 K7ENM7 598 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 FAM13AO94988 1023 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 GDI1P31150 447 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 UBA7P41226 1012 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 GPR17Q13304 367 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 DHX8Q14562 1220 aaKnown RBP16.22■□□□□ 0.19
CLN3-236ENST00000568558 TEAD2Q15562 447 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 SPATA1Q5VX52 437 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 DSTYKQ6XUX3 929 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 USP37Q86T82 979 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 MAP4K3Q8IVH8 894 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 DCLK2Q8N568 766 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 MYCT1Q8N699 235 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 ZBTB44Q8NCP5 570 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 SHKBP1Q8TBC3 707 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 ZSCAN18Q8TBC5 510 aaPredicted RBP16.22■□□□□ 0.19
CLN3-236ENST00000568558 DEPDC1BQ8WUY9 529 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 NELL1Q92832 810 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 RMDN1Q96DB5 314 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 PGLYRP2Q96PD5 576 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 TSPAN18Q96SJ8 248 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 LRRC3Q9BY71 257 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 RPF1Q9H9Y2 349 aaKnown RBP16.22■□□□□ 0.19
CLN3-236ENST00000568558 TRPV4Q9HBA0 871 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 PARVGQ9HBI0 331 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 PRMT8Q9NR22 394 aaPredicted RBP16.22■□□□□ 0.19
CLN3-236ENST00000568558 GPR179Q6PRD1 2367 aa16.22■□□□□ 0.19
CLN3-236ENST00000568558 ZNF638Q14966 1978 aaKnown RBP16.22■□□□□ 0.19
CLN3-236ENST00000568558 A0A0B4J269 797 aa16.21■□□□□ 0.19
CLN3-236ENST00000568558 MAN2B1O00754 1011 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms