RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 RABGGTAQ92696 567 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 CXCL16Q9H2A7 254 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 SRRDQ9UH36 339 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 SIX4Q9UIU6 781 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 COG5Q9UP83 839 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 NOD1Q9Y239 953 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 MYCP01106 439 aaPredicted RBP7.55□□□□□ -1.2
SMG1-215ENST00000568239 GRM5P41594 1212 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 CRYBB1P53674 252 aaPredicted RBP7.55□□□□□ -1.2
SMG1-215ENST00000568239 ACAD10Q6JQN1 1059 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 FBXO38Q6PIJ6 1188 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 RSPH3Q86UC2 560 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 SESTD1Q86VW0 696 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 CREG2Q8IUH2 290 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 HPDLQ96IR7 371 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 BTBD6Q96KE9 485 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 HINFPQ9BQA5 517 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 XYLT2Q9H1B5 865 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 DPP3Q9NY33 737 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 CNOT8Q9UFF9 292 aaKnown RBP7.55□□□□□ -1.2
SMG1-215ENST00000568239 GTF2IRD1Q9UHL9 959 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 AMFRQ9UKV5 643 aa7.55□□□□□ -1.2
SMG1-215ENST00000568239 CEP104O60308 925 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 ADAMTS4O75173 837 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 RECQL4O94761 1208 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 KIF4AO95239 1232 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 PRLRP16471 622 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 ZSCAN20P17040 1043 aaPredicted RBP7.54□□□□□ -1.2
SMG1-215ENST00000568239 ASPAP45381 313 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 VEGFBP49765 207 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 MRPS25P82663 173 aaKnown RBP7.54□□□□□ -1.2
SMG1-215ENST00000568239 CLEC16AQ2KHT3 1053 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 CFAP221Q4G0U5 840 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 ZNF677Q86XU0 584 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 NME8Q8N427 588 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 GPR161Q8N6U8 529 aaKnown RBP7.54□□□□□ -1.2
SMG1-215ENST00000568239 LRRC57Q8N9N7 239 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 ZNF564Q8TBZ8 553 aaPredicted RBP7.54□□□□□ -1.2
SMG1-215ENST00000568239 ZNF606Q8WXB4 792 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 C11orf70Q9BRQ4 267 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 NUP85Q9BW27 656 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 PARD6BQ9BYG5 372 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 CELF4Q9BZC1 486 aaKnown RBP7.54□□□□□ -1.2
SMG1-215ENST00000568239 CDY2AQ9Y6F7 541 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 NCANO14594 1321 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 HMGCRP04035 888 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 THPOP40225 353 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 TNNC1P63316 161 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 RBP5P82980 135 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 LLGL2Q6P1M3 1020 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 REM2Q8IYK8 340 aaPredicted RBP7.54□□□□□ -1.2
SMG1-215ENST00000568239 SMYD3Q9H7B4 428 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 ARGLU1Q9NWB6 273 aaPredicted RBP7.54□□□□□ -1.2
SMG1-215ENST00000568239 NOC2LQ9Y3T9 749 aaKnown RBP7.54□□□□□ -1.2
SMG1-215ENST00000568239 C2CD2Q9Y426 696 aa7.54□□□□□ -1.2
SMG1-215ENST00000568239 RPS6KA5O75582 802 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 UNGP13051 313 aaPredicted RBP7.53□□□□□ -1.2
SMG1-215ENST00000568239 P4HA1P13674 534 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 RRM1P23921 792 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 YWHAEP62258 255 aaKnown RBP7.53□□□□□ -1.2
SMG1-215ENST00000568239 MRPS6P82932 125 aaKnown RBP7.53□□□□□ -1.2
SMG1-215ENST00000568239 PTGISQ16647 500 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 NT5DC3Q86UY8 548 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 SPATA4Q8NEY3 305 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 WNT8BQ93098 351 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 C18orf25Q96B23 403 aaPredicted RBP7.53□□□□□ -1.2
SMG1-215ENST00000568239 ZMAT2Q96NC0 199 aaKnown RBP7.53□□□□□ -1.2
SMG1-215ENST00000568239 RNF39Q9H2S5 420 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 PLEKHA4Q9H4M7 779 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 ADAM22Q9P0K1 906 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 ALG6Q9Y672 507 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 SCN10AQ9Y5Y9 1956 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 SCN1AP35498 2009 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 ATP8B3O60423 1300 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 SPOPO43791 374 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 YY1P25490 414 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 AXLP30530 894 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 MYO1EQ12965 1108 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 PCBP1Q15365 356 aaKnown RBP eCLIP7.53□□□□□ -1.2
SMG1-215ENST00000568239 MMS22LQ6ZRQ5 1243 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 RNF180Q86T96 592 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 FAM228AQ86W67 206 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 MCOLN2Q8IZK6 566 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 PCSK9Q8NBP7 692 aaKnown RBP7.53□□□□□ -1.2
SMG1-215ENST00000568239 ZNF784Q8NCA9 323 aaPredicted RBP7.53□□□□□ -1.2
SMG1-215ENST00000568239 RPGRIP1Q96KN7 1286 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 SELENOOQ9BVL4 669 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 UPF3AQ9H1J1 476 aaKnown RBP7.53□□□□□ -1.2
SMG1-215ENST00000568239 TUBGCP4Q9UGJ1 667 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 GTF3C4Q9UKN8 822 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 ITGA11Q9UKX5 1188 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 ST3GAL5Q9UNP4 418 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 SNX9Q9Y5X1 595 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 TLR3O15455 904 aaKnown RBP7.53□□□□□ -1.2
SMG1-215ENST00000568239 ZMYND10O75800 440 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 ATICP31939 592 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 CCDC70Q6NSX1 233 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 CD302Q8IX05 232 aa7.53□□□□□ -1.2
SMG1-215ENST00000568239 C1orf131Q8NDD1 294 aaKnown RBP7.53□□□□□ -1.2
SMG1-215ENST00000568239 BEST2Q8NFU1 509 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms