RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 PDLIM2Q96JY6 352 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 CLPTM1LQ96KA5 538 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 SMOQ99835 787 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 IMPG2Q9BZV3 1241 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 SEMA4GQ9NTN9 838 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 HSFX1Q9UBD0 423 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 UTP18Q9Y5J1 556 aaKnown RBP eCLIP3.83□□□□□ -1.8
VPS35-207ENST00000568191 PCSK5Q92824 1860 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 E7ENX8 843 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 DTNBO60941 627 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 SOAT2O75908 522 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 MT-CO1P00395 513 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 CD1AP06126 327 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 ANXA11P50995 505 aaKnown RBP3.82□□□□□ -1.8
VPS35-207ENST00000568191 NXPH1P58417 271 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 TAP2Q03519 686 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 ITIH3Q06033 890 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 SLFN5Q08AF3 891 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 DYRK1AQ13627 763 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 HLXQ14774 488 aaPredicted RBP3.82□□□□□ -1.8
VPS35-207ENST00000568191 UAP1L1Q3KQV9 507 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 KIAA1614Q5VZ46 1190 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 VWA1Q6PCB0 445 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 MICALCLQ6ZW33 695 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 ZNF365Q70YC5 407 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 MIER2Q8N344 545 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 SLC17A8Q8NDX2 589 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 IFI44Q8TCB0 444 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 MTMR8Q96EF0 704 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 UROC1Q96N76 676 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 BRD9Q9H8M2 597 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 SIDT1Q9NXL6 827 aaKnown RBP3.82□□□□□ -1.8
VPS35-207ENST00000568191 FOXJ2Q9P0K8 574 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 CFAP97Q9P2B7 532 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 POLHQ9Y253 713 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 SPEF1Q9Y4P9 236 aa3.82□□□□□ -1.8
VPS35-207ENST00000568191 SALL3Q9BXA9 1300 aa3.81□□□□□ -1.8
VPS35-207ENST00000568191 CCDC154A6NI56 674 aa3.81□□□□□ -1.8
VPS35-207ENST00000568191 GCOM1H8Y6P7 765 aaPredicted RBP3.81□□□□□ -1.8
VPS35-207ENST00000568191 TRIAP1O43715 76 aa3.81□□□□□ -1.8
VPS35-207ENST00000568191 CHEK2O96017 543 aa3.81□□□□□ -1.8
VPS35-207ENST00000568191 ZNF37AP17032 561 aaPredicted RBP3.81□□□□□ -1.8
VPS35-207ENST00000568191 CDK11BP21127 795 aaKnown RBP3.81□□□□□ -1.8
VPS35-207ENST00000568191 C5AR1P21730 350 aa3.81□□□□□ -1.8
VPS35-207ENST00000568191 IARSP41252 1262 aaKnown RBP3.81□□□□□ -1.8
VPS35-207ENST00000568191 GRIA3P42263 894 aa3.81□□□□□ -1.8
VPS35-207ENST00000568191 PTH2RP49190 550 aa3.81□□□□□ -1.8
VPS35-207ENST00000568191 ADKP55263 362 aaKnown RBP3.81□□□□□ -1.8
VPS35-207ENST00000568191 POU6F2P78424 691 aaPredicted RBP3.81□□□□□ -1.8
VPS35-207ENST00000568191 NHLH1Q02575 133 aa3.81□□□□□ -1.8
VPS35-207ENST00000568191 TARDBPQ13148 414 aaKnown RBP eCLIP3.81□□□□□ -1.8
VPS35-207ENST00000568191 PTPRRQ15256 657 aa3.81□□□□□ -1.8
VPS35-207ENST00000568191 INAVAQ3KP66 663 aa3.81□□□□□ -1.8
VPS35-207ENST00000568191 CD300EQ496F6 205 aaPredicted RBP3.81□□□□□ -1.8
VPS35-207ENST00000568191 PTF1AQ7RTS3 328 aa3.81□□□□□ -1.8
VPS35-207ENST00000568191 PDSS2Q86YH6 399 aa3.81□□□□□ -1.8
VPS35-207ENST00000568191 SCAMP4Q969E2 229 aa3.81□□□□□ -1.8
VPS35-207ENST00000568191 CPNE5Q9HCH3 593 aa3.81□□□□□ -1.8
VPS35-207ENST00000568191 KMT5AQ9NQR1 393 aa3.81□□□□□ -1.8
VPS35-207ENST00000568191 TRHDEQ9UKU6 1024 aa3.81□□□□□ -1.8
VPS35-207ENST00000568191 NR2E3Q9Y5X4 410 aa3.81□□□□□ -1.8
VPS35-207ENST00000568191 POLR2AP24928 1970 aaKnown RBP3.8□□□□□ -1.8
VPS35-207ENST00000568191 CCDC78A2IDD5 438 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 F5H697 171 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 POLRMTO00411 1230 aaKnown RBP3.8□□□□□ -1.8
VPS35-207ENST00000568191 HTRA2O43464 458 aaPredicted RBP3.8□□□□□ -1.8
VPS35-207ENST00000568191 PROM1O43490 865 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 FTH1P19P0C7X4 201 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 ZNF280AP59817 542 aaPredicted RBP3.8□□□□□ -1.8
VPS35-207ENST00000568191 ABCB5Q2M3G0 1257 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 PLAC9Q5JTB6 97 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 CFAP52Q8N1V2 620 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 Q8NA96 180 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 C3orf20Q8ND61 904 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 SLC30A5Q8TAD4 765 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 ZCRB1Q8TBF4 217 aaKnown RBP3.8□□□□□ -1.8
VPS35-207ENST00000568191 DDX17Q92841 729 aaKnown RBP3.8□□□□□ -1.8
VPS35-207ENST00000568191 RAB24Q969Q5 203 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 COA7Q96BR5 231 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 TEKT5Q96M29 485 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 KLHL32Q96NJ5 620 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 TRIB1Q96RU8 372 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 TIMP4Q99727 224 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 TLR10Q9BXR5 811 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 KLK15Q9H2R5 256 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 RLIMQ9NVW2 624 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 TUBD1Q9UJT1 453 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 IPPQ9Y573 584 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 ENTPD2Q9Y5L3 495 aa3.8□□□□□ -1.8
VPS35-207ENST00000568191 SPATA31A3Q5VYP0 1347 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 A0A0B4J269 797 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 SLC16A6O15403 523 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 SNUPNO95149 360 aaKnown RBP3.79□□□□□ -1.8
VPS35-207ENST00000568191 TTLL1O95922 423 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 GNAI2P04899 355 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 WT1P19544 449 aaPredicted RBP3.79□□□□□ -1.8
VPS35-207ENST00000568191 POU3F3P20264 500 aaPredicted RBP3.79□□□□□ -1.8
VPS35-207ENST00000568191 NPTX2P47972 431 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 TLE1Q04724 770 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 TUBB3Q13509 450 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms