RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 TULP1O00294 542 aaPredicted RBP14.49□□□□□ -0.09
CLK3-216ENST00000564468 KLRC4O43908 158 aa14.49□□□□□ -0.09
CLK3-216ENST00000564468 ZMYND10O75800 440 aa14.49□□□□□ -0.09
CLK3-216ENST00000564468 HNRNPA1P09651 372 aaKnown RBP eCLIP14.49□□□□□ -0.09
CLK3-216ENST00000564468 SPATA31D3P0C874 917 aa14.49□□□□□ -0.09
CLK3-216ENST00000564468 IGFBP6P24592 240 aaPredicted RBP14.49□□□□□ -0.09
CLK3-216ENST00000564468 HOXA9P31269 272 aa14.49□□□□□ -0.09
CLK3-216ENST00000564468 ANP32AP39687 249 aaKnown RBP14.49□□□□□ -0.09
CLK3-216ENST00000564468 AARSP49588 968 aaKnown RBP eCLIP14.49□□□□□ -0.09
CLK3-216ENST00000564468 MRPL58Q14197 206 aaKnown RBP14.49□□□□□ -0.09
CLK3-216ENST00000564468 KNOP1Q1ED39 458 aaKnown RBP14.49□□□□□ -0.09
CLK3-216ENST00000564468 KMT5BQ4FZB7 885 aa14.49□□□□□ -0.09
CLK3-216ENST00000564468 CTXN3Q4LDR2 81 aa14.49□□□□□ -0.09
CLK3-216ENST00000564468 SLC8B1Q6J4K2 584 aa14.49□□□□□ -0.09
CLK3-216ENST00000564468 SPATA31D4Q6ZUB0 917 aa14.49□□□□□ -0.09
CLK3-216ENST00000564468 CCDC149Q6ZUS6 474 aa14.49□□□□□ -0.09
CLK3-216ENST00000564468 PLCD3Q8N3E9 789 aa14.49□□□□□ -0.09
CLK3-216ENST00000564468 POMKQ9H5K3 350 aa14.49□□□□□ -0.09
CLK3-216ENST00000564468 PIDD1Q9HB75 910 aa14.49□□□□□ -0.09
CLK3-216ENST00000564468 HSPBP1Q9NZL4 362 aa14.49□□□□□ -0.09
CLK3-216ENST00000564468 FBXW11Q9UKB1 542 aa14.49□□□□□ -0.09
CLK3-216ENST00000564468 USTQ9Y2C2 406 aa14.49□□□□□ -0.09
CLK3-216ENST00000564468 R3HCC1Q9Y3T6 440 aaKnown RBP14.49□□□□□ -0.09
CLK3-216ENST00000564468 ANO9A1A5B4 782 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 PIRO00625 290 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 PAPLNO95428 1278 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 RPN1P04843 607 aaKnown RBP14.48□□□□□ -0.09
CLK3-216ENST00000564468 ODC1P11926 461 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 TYMPP19971 482 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 ELF1P32519 619 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 PNPLA4P41247 253 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 TAF6P49848 677 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 GUCY2FP51841 1108 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 LILRA4P59901 499 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 TFAMQ00059 246 aaKnown RBP14.48□□□□□ -0.09
CLK3-216ENST00000564468 YWHAHQ04917 246 aaPredicted RBP14.48□□□□□ -0.09
CLK3-216ENST00000564468 PPM1LQ5SGD2 360 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 TPGS2Q68CL5 300 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 NELFCDQ8IXH7 590 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 XXYLT1Q8NBI6 393 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 ZNF461Q8TAF7 563 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 SMG7Q92540 1137 aaKnown RBP14.48□□□□□ -0.09
CLK3-216ENST00000564468 ACSF2Q96CM8 615 aaPredicted RBP14.48□□□□□ -0.09
CLK3-216ENST00000564468 ANKRD36BP1Q96IX9 119 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 ZNF560Q96MR9 790 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 PRKD2Q9BZL6 878 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 AGPAT3Q9NRZ7 376 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 DSEQ9UL01 958 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 MAFFQ9ULX9 164 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 DOCK8Q8NF50 2099 aa14.48□□□□□ -0.09
CLK3-216ENST00000564468 TGFB1I1O43294 461 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 TBC1D4O60343 1298 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 XYLBO75191 536 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 RFPL2O75678 378 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 OAZ2O95190 189 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 C8AP07357 584 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 WEE2P0C1S8 567 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 TMEM191BP0C7N4 346 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 HOXD13P35453 343 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 PTPN5P54829 565 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 SV2CQ496J9 727 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 OTOP3Q7RTS5 596 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 RNF135Q8IUD6 432 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 C12orf56Q8IXR9 622 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 EFCAB13Q8IY85 973 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 TDRD5Q8NAT2 981 aaKnown RBP14.47□□□□□ -0.09
CLK3-216ENST00000564468 SENP8Q96LD8 212 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 GOLPH3LQ9H4A5 285 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 TSHZ2Q9NRE2 1034 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 HOOK1Q9UJC3 728 aaKnown RBP14.47□□□□□ -0.09
CLK3-216ENST00000564468 FBXL5Q9UKA1 691 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 ITGA11Q9UKX5 1188 aa14.47□□□□□ -0.09
CLK3-216ENST00000564468 OR6C75A6NL08 312 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 CLIC2O15247 247 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 ADAM12O43184 909 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 PRPF40AO75400 957 aaKnown RBP14.46□□□□□ -0.09
CLK3-216ENST00000564468 ABLIM3O94929 683 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 RHOBTB3O94955 611 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 TNNC2P02585 160 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 POU2F2P09086 479 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 ATF2P15336 505 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 ARPP19P56211 112 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 ROR1Q01973 937 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 DPYDQ12882 1025 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 STK4Q13043 487 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 KCNB1Q14721 858 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 SNRNP35Q16560 246 aaKnown RBP14.46□□□□□ -0.09
CLK3-216ENST00000564468 DUOXA2Q1HG44 320 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 OVOS1Q6IE37 1185 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 RSPO2Q6UXX9 243 aaPredicted RBP14.46□□□□□ -0.09
CLK3-216ENST00000564468 METTL23Q86XA0 190 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 SUGP1Q8IWZ8 645 aaKnown RBP14.46□□□□□ -0.09
CLK3-216ENST00000564468 KIAA0895Q8NCT3 520 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 ZSWIM2Q8NEG5 633 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 EDAQ92838 391 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 FNBP1Q96RU3 617 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 PDE11AQ9HCR9 933 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 WDR6Q9NNW5 1121 aaKnown RBP14.46□□□□□ -0.09
CLK3-216ENST00000564468 CHMP5Q9NZZ3 219 aa14.46□□□□□ -0.09
CLK3-216ENST00000564468 MUTYHQ9UIF7 546 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms