RNA–Protein interactions for RNA: ENST00000563485.2

HMGB1P33-201, Transcript of high mobility group box 1 pseudogene 33, humanhuman

BASIC

Gene HMGB1P33, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P33-201ENST00000563485 CTTNBP2NLQ9P2B4 639 aa4.45□□□□□ -1.7
HMGB1P33-201ENST00000563485 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.45□□□□□ -1.7
HMGB1P33-201ENST00000563485 PCDHB1Q9Y5F3 818 aa4.45□□□□□ -1.7
HMGB1P33-201ENST00000563485 TNFRSF18Q9Y5U5 241 aa4.45□□□□□ -1.7
HMGB1P33-201ENST00000563485 PRAMEF33A0A0G2JMD5 474 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 SHTN1A0MZ66 631 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 PEX1O43933 1283 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 PRAMEF10O60809 474 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 SLC43A1O75387 559 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 IGLV2-14P01704 120 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 KCNA2P16389 499 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 CACNA2D1P54289 1103 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 ELLP55199 621 aaPredicted RBP4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 EVA1CP58658 441 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 AMPD3Q01432 767 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 MC2RQ01718 297 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 KRTAP1-1Q07627 177 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 RAB39AQ14964 217 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 ODF1Q14990 250 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 COLEC12Q5KU26 742 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 GADL1Q6ZQY3 521 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 CLNKQ7Z7G1 428 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 PRPF38AQ8NAV1 312 aaKnown RBP4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 NSUN7Q8NE18 718 aaKnown RBP4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 IMPG2Q9BZV3 1241 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 KLK15Q9H2R5 256 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 ADARB2Q9NS39 739 aaKnown RBP4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 SEMA4GQ9NTN9 838 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 MRFAP1Q9Y605 127 aa4.44□□□□□ -1.7
HMGB1P33-201ENST00000563485 YY2O15391 372 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 C1QL1O75973 258 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 SUN1O94901 812 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 MATN4O95460 622 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 GATA3P23771 443 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 FOLR3P41439 243 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 FPGSQ05932 587 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 ZNF844Q08AG5 666 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 PTPN21Q16825 1174 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 UAP1L1Q3KQV9 507 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 CD300EQ496F6 205 aaPredicted RBP4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 VWA1Q6PCB0 445 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 PNMA8AQ86V59 439 aaPredicted RBP4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 CFAP52Q8N1V2 620 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 PDPRQ8NCN5 879 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 SLC17A8Q8NDX2 589 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 SLC30A5Q8TAD4 765 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 LPIN2Q92539 896 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 NELL1Q92832 810 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 SPATA5L1Q9BVQ7 753 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 IL17RBQ9NRM6 502 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 INTS13Q9NVM9 706 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 CALCOCO1Q9P1Z2 691 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 KAT6AQ92794 2004 aa4.43□□□□□ -1.7
HMGB1P33-201ENST00000563485 CCDC195A0A1B0GUA6 201 aa4.42□□□□□ -1.7
HMGB1P33-201ENST00000563485 TOR1BO14657 336 aa4.42□□□□□ -1.7
HMGB1P33-201ENST00000563485 C1RP00736 705 aa4.42□□□□□ -1.7
HMGB1P33-201ENST00000563485 SRGNP10124 158 aa4.42□□□□□ -1.7
HMGB1P33-201ENST00000563485 RPS7P62081 194 aaKnown RBP4.42□□□□□ -1.7
HMGB1P33-201ENST00000563485 KRT85P78386 507 aa4.42□□□□□ -1.7
HMGB1P33-201ENST00000563485 EFCAB2Q5VUJ9 269 aa4.42□□□□□ -1.7
HMGB1P33-201ENST00000563485 KIAA0895LQ68EN5 471 aa4.42□□□□□ -1.7
HMGB1P33-201ENST00000563485 PPP4R3AQ6IN85 833 aa4.42□□□□□ -1.7
HMGB1P33-201ENST00000563485 TSHZ1Q6ZSZ6 1077 aa4.42□□□□□ -1.7
HMGB1P33-201ENST00000563485 ADGRG5Q8IZF4 528 aa4.42□□□□□ -1.7
HMGB1P33-201ENST00000563485 NSUN6Q8TEA1 469 aaKnown RBP4.42□□□□□ -1.7
HMGB1P33-201ENST00000563485 TFAP2BQ92481 460 aa4.42□□□□□ -1.7
HMGB1P33-201ENST00000563485 LRIG1Q96JA1 1093 aa4.42□□□□□ -1.7
HMGB1P33-201ENST00000563485 VRK1Q99986 396 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P33-201ENST00000563485 ASB6Q9NWX5 421 aa4.42□□□□□ -1.7
HMGB1P33-201ENST00000563485 TNKSO95271 1327 aa4.42□□□□□ -1.7
HMGB1P33-201ENST00000563485 CADPSQ9ULU8 1353 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 LRRC14BA6NHZ5 514 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 LRRC3CA6NJW4 275 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 E9PLN8 166 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 PROM1O43490 865 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 ANXA11P50995 505 aaKnown RBP4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 MAPK10P53779 464 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 ADKP55263 362 aaKnown RBP4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 DSC2Q02487 901 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 SNAPC2Q13487 334 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 DYRK1AQ13627 763 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 PREPLQ4J6C6 727 aaPredicted RBP4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 KHDC1Q4VXA5 237 aaKnown RBP4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 TAPT1Q6NXT6 567 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 PEG10Q86TG7 708 aaKnown RBP4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 TOR1AIP2Q8NFQ8 470 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 MYCBPAPQ8TBZ2 947 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 FBXO41Q8TF61 875 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 ZNF384Q8TF68 577 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 FBXL20Q96IG2 436 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 SMAD5Q99717 465 aaKnown RBP4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 VKORC1Q9BQB6 163 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 HEPHQ9BQS7 1158 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 SLC17A6Q9P2U8 582 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 NEU2Q9Y3R4 380 aa4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 CFAP20Q9Y6A4 193 aaKnown RBP4.41□□□□□ -1.7
HMGB1P33-201ENST00000563485 NT5C1B-RDH14C9J2C7 533 aa4.4□□□□□ -1.71
HMGB1P33-201ENST00000563485 F2RL2O00254 374 aa4.4□□□□□ -1.71
HMGB1P33-201ENST00000563485 MPPED1O15442 326 aa4.4□□□□□ -1.71
HMGB1P33-201ENST00000563485 ZRANB2O95218 330 aaKnown RBP eCLIP4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms