RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 C1orf112Q9NSG2 853 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 ERVK-7P63135 1459 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 PVALEFA0A1B0GWK0 134 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 TMEM114B3SHH9 223 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 ETS2P15036 469 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 RAG1P15918 1043 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 TAC1P20366 129 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 SLC10A5Q5PT55 438 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 IZUMO3Q5VZ72 239 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 DPY19L2Q6NUT2 758 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 PDZD4Q76G19 769 aaPredicted RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 CCDC33Q8N5R6 958 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 SHCBP1Q8NEM2 672 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 PLEKHO2Q8TD55 490 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 DDX3XO00571 662 aaKnown RBP eCLIP6.55□□□□□ -1.36
CLK3-212ENST00000563418 USP1O94782 785 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 CDKAL1Q5VV42 579 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 MICU2Q8IYU8 434 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 EML4Q9HC35 981 aaKnown RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 BTBD3Q9Y2F9 522 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 ATP7BP35670 1465 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 NOS1APO75052 506 aaPredicted RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 ADCY7P51828 1080 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 AMPD2Q01433 879 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 PLOD1Q02809 727 aaPredicted RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 PTPROQ16827 1216 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 XKRXQ6PP77 449 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 ZNF354CQ86Y25 554 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 FAM178BQ8IXR5 827 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 IQCKQ8N0W5 287 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 KCTD17Q8N5Z5 321 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 TDRD5Q8NAT2 981 aaKnown RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 EPS8L3Q8TE67 593 aaKnown RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 ARHGEF1Q92888 912 aaKnown RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 TAMM41Q96BW9 452 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 KIF17Q9P2E2 1029 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 PJA2O43164 708 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 NBNO60934 754 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 CDK16Q00536 496 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 DPYSQ14117 519 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 SH3D19Q5HYK7 790 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 C6orf183Q5T699 404 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 ARHGEF16Q5VV41 709 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 KRT28Q7Z3Y7 464 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 SVOPQ8N4V2 548 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 PNPT1Q8TCS8 783 aaKnown RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 GINM1Q9NU53 330 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 DDX56Q9NY93 547 aaKnown RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 TRMT6Q9UJA5 497 aaKnown RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 SH2B2O14492 632 aaPredicted RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 FARP2O94887 1054 aaPredicted RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 CAMTA2O94983 1202 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 SLC9A3P48764 834 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 CCT3P49368 545 aaKnown RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 YARSP54577 528 aaKnown RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 IYDQ6PHW0 289 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 DYMQ7RTS9 669 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 GUF1Q8N442 669 aaKnown RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 TP53INP1Q96A56 240 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 ZNF570Q96NI8 536 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 TMEM120AQ9BXJ8 343 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.55□□□□□ -1.36
CLK3-212ENST00000563418 MROH7-TTC4A0A0A0MT08 1334 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 PRCPP42785 496 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 TBC1D10BQ4KMP7 808 aaPredicted RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 LDHAL6AQ6ZMR3 332 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 RTKN2Q8IZC4 609 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 ENKURQ8TC29 256 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 TRIM51Q9BSJ1 452 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 TRIM39Q9HCM9 518 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 CENPBD1B2RD01 187 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 ENTPD5O75356 428 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 KITP10721 976 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 CCNB1P14635 433 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 ALDH1A3P47895 512 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 IREB2P48200 963 aaKnown RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 STX5Q13190 355 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 TJAP1Q5JTD0 557 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 ALLCQ8N6M5 410 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 CDH19Q9H159 772 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 POLD4Q9HCU8 107 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 IPO11Q9UI26 975 aaKnown RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 CEP152O94986 1710 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 GTPBP10A4D1E9 387 aaKnown RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 FBP2O00757 339 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 EPN2O95208 641 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 LINGO3P0C6S8 592 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 GNG2P59768 71 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 C4orf50Q6ZRC1 276 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 ASPSCR1Q9BZE9 553 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 OSBPL7Q9BZF2 842 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 C20orf96Q9NUD7 363 aaPredicted RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 UBA2Q9UBT2 640 aaPredicted RBP6.55□□□□□ -1.36
CLK3-212ENST00000563418 SLC8A2Q9UPR5 921 aa6.55□□□□□ -1.36
CLK3-212ENST00000563418 EYA2O00167 538 aa6.54□□□□□ -1.36
CLK3-212ENST00000563418 HMGB3O15347 200 aaKnown RBP6.54□□□□□ -1.36
CLK3-212ENST00000563418 STIP1P31948 543 aaKnown RBP6.54□□□□□ -1.36
CLK3-212ENST00000563418 ADD1P35611 737 aaKnown RBP6.54□□□□□ -1.36
CLK3-212ENST00000563418 PTK2Q05397 1052 aa6.54□□□□□ -1.36
CLK3-212ENST00000563418 TMTC4Q5T4D3 741 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms