RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 ZSCAN20P17040 1043 aaPredicted RBP22.76■■□□□ 1.23
CLN3-209ENST00000561689 CDH8P55286 799 aa22.76■■□□□ 1.23
CLN3-209ENST00000561689 BEST2Q8NFU1 509 aa22.76■■□□□ 1.23
CLN3-209ENST00000561689 NAPGQ99747 312 aaPredicted RBP22.76■■□□□ 1.23
CLN3-209ENST00000561689 SMYD3Q9H7B4 428 aa22.76■■□□□ 1.23
CLN3-209ENST00000561689 PPEF2O14830 753 aa22.75■■□□□ 1.23
CLN3-209ENST00000561689 MGEA5O60502 916 aa22.75■■□□□ 1.23
CLN3-209ENST00000561689 GNA15P30679 374 aa22.75■■□□□ 1.23
CLN3-209ENST00000561689 XKR4Q5GH76 650 aa22.75■■□□□ 1.23
CLN3-209ENST00000561689 RNF10Q8N5U6 811 aaKnown RBP22.75■■□□□ 1.23
CLN3-209ENST00000561689 ZFP42Q96MM3 310 aa22.75■■□□□ 1.23
CLN3-209ENST00000561689 INTUQ9ULD6 942 aa22.75■■□□□ 1.23
CLN3-209ENST00000561689 SSTR3P32745 418 aaPredicted RBP22.74■■□□□ 1.23
CLN3-209ENST00000561689 ZNF132P52740 706 aa22.74■■□□□ 1.23
CLN3-209ENST00000561689 C1QTNF8P60827 252 aa22.74■■□□□ 1.23
CLN3-209ENST00000561689 TRIM58Q8NG06 486 aa22.74■■□□□ 1.23
CLN3-209ENST00000561689 BCO2Q9BYV7 579 aa22.74■■□□□ 1.23
CLN3-209ENST00000561689 THAP2Q9H0W7 228 aa22.74■■□□□ 1.23
CLN3-209ENST00000561689 SDCBP2Q9H190 292 aa22.74■■□□□ 1.23
CLN3-209ENST00000561689 VRTNQ9H8Y1 702 aa22.74■■□□□ 1.23
CLN3-209ENST00000561689 PUF60Q9UHX1 559 aaKnown RBP22.74■■□□□ 1.23
CLN3-209ENST00000561689 UBQLN1Q9UMX0 589 aaKnown RBP22.74■■□□□ 1.23
CLN3-209ENST00000561689 KCNE1P15382 129 aa22.74■■□□□ 1.23
CLN3-209ENST00000561689 IBSPP21815 317 aaPredicted RBP22.74■■□□□ 1.23
CLN3-209ENST00000561689 LPPQ93052 612 aa22.74■■□□□ 1.23
CLN3-209ENST00000561689 ALS2CR12Q96Q35 445 aa22.74■■□□□ 1.23
CLN3-209ENST00000561689 ISCUQ9H1K1 167 aa22.74■■□□□ 1.23
CLN3-209ENST00000561689 L2HGDHQ9H9P8 463 aa22.74■■□□□ 1.23
CLN3-209ENST00000561689 CITO14578 2027 aa22.73■■□□□ 1.23
CLN3-209ENST00000561689 BTNL10A8MVZ5 291 aa22.73■■□□□ 1.23
CLN3-209ENST00000561689 CAND2O75155 1236 aa22.73■■□□□ 1.23
CLN3-209ENST00000561689 CFHP08603 1231 aa22.73■■□□□ 1.23
CLN3-209ENST00000561689 TMEM253P0C7T8 217 aa22.73■■□□□ 1.23
CLN3-209ENST00000561689 NOP2P46087 812 aaKnown RBP22.73■■□□□ 1.23
CLN3-209ENST00000561689 TRAF7Q6Q0C0 670 aa22.73■■□□□ 1.23
CLN3-209ENST00000561689 CTNNBL1Q8WYA6 563 aaPredicted RBP22.73■■□□□ 1.23
CLN3-209ENST00000561689 OGDHLQ9ULD0 1010 aa22.73■■□□□ 1.23
CLN3-209ENST00000561689 THAP12O43422 761 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 RTN2O75298 545 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 ATP1A1P05023 1023 aaKnown RBP22.72■■□□□ 1.23
CLN3-209ENST00000561689 GZMAP12544 262 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 ITGA4P13612 1032 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 CDK7P50613 346 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 MYO1EQ12965 1108 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 ZNF677Q86XU0 584 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 ARHGEF26Q96DR7 871 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 MMS19Q96T76 1030 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 PDCL3Q9H2J4 239 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 GOLGA2P5Q9HBQ8 144 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 ATP8B3O60423 1300 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 FRMPD3Q5JV73 1810 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 ANKRD62A6NC57 917 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 PTGESO14684 152 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 P4HA1P13674 534 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 YWHAEP62258 255 aaKnown RBP22.72■■□□□ 1.23
CLN3-209ENST00000561689 TNNC1P63316 161 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 SOX4Q06945 474 aaPredicted RBP22.72■■□□□ 1.23
CLN3-209ENST00000561689 MBTPS1Q14703 1052 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 CLEC16AQ2KHT3 1053 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 C9orf57Q5W0N0 161 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 DNAJC5GQ8N7S2 189 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 TSC1Q92574 1164 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 ADAM2Q99965 735 aa22.72■■□□□ 1.23
CLN3-209ENST00000561689 TLR3O15455 904 aaKnown RBP22.71■■□□□ 1.23
CLN3-209ENST00000561689 PALMO75781 387 aa22.71■■□□□ 1.23
CLN3-209ENST00000561689 STAU1O95793 577 aaKnown RBP22.71■■□□□ 1.23
CLN3-209ENST00000561689 MLH1P40692 756 aa22.71■■□□□ 1.23
CLN3-209ENST00000561689 AFF1P51825 1210 aaKnown RBP22.71■■□□□ 1.23
CLN3-209ENST00000561689 ORC1Q13415 861 aa22.71■■□□□ 1.23
CLN3-209ENST00000561689 DSC3Q14574 896 aa22.71■■□□□ 1.23
CLN3-209ENST00000561689 PASD1Q8IV76 773 aa22.71■■□□□ 1.23
CLN3-209ENST00000561689 USP38Q8NB14 1042 aa22.71■■□□□ 1.23
CLN3-209ENST00000561689 RNF169Q8NCN4 708 aa22.71■■□□□ 1.23
CLN3-209ENST00000561689 FAXDC2Q96IV6 333 aa22.71■■□□□ 1.23
CLN3-209ENST00000561689 GAD1Q99259 594 aa22.71■■□□□ 1.23
CLN3-209ENST00000561689 FAM126BQ8IXS8 530 aa22.7■■□□□ 1.23
CLN3-209ENST00000561689 HACE1Q8IYU2 909 aa22.7■■□□□ 1.23
CLN3-209ENST00000561689 ZNF606Q8WXB4 792 aa22.7■■□□□ 1.23
CLN3-209ENST00000561689 CPA5Q8WXQ8 436 aa22.7■■□□□ 1.23
CLN3-209ENST00000561689 CYFIP2Q96F07 1278 aa22.7■■□□□ 1.23
CLN3-209ENST00000561689 OSGEPQ9NPF4 335 aa22.7■■□□□ 1.23
CLN3-209ENST00000561689 CD4P01730 458 aa22.7■■□□□ 1.22
CLN3-209ENST00000561689 BRD2P25440 801 aaKnown RBP22.7■■□□□ 1.22
CLN3-209ENST00000561689 ACAD10Q6JQN1 1059 aa22.7■■□□□ 1.22
CLN3-209ENST00000561689 SLC35G2Q8TBE7 412 aa22.7■■□□□ 1.22
CLN3-209ENST00000561689 ZSWIM1Q9BR11 485 aa22.7■■□□□ 1.22
CLN3-209ENST00000561689 CYP3A43Q9HB55 503 aa22.7■■□□□ 1.22
CLN3-209ENST00000561689 HMGXB4Q9UGU5 601 aa22.7■■□□□ 1.22
CLN3-209ENST00000561689 CHORDC1Q9UHD1 332 aaPredicted RBP22.7■■□□□ 1.22
CLN3-209ENST00000561689 JRKLQ9Y4A0 524 aa22.7■■□□□ 1.22
CLN3-209ENST00000561689 SNX9Q9Y5X1 595 aa22.7■■□□□ 1.22
CLN3-209ENST00000561689 MRFAP1Q9Y605 127 aa22.7■■□□□ 1.22
CLN3-209ENST00000561689 A0A0A6YYK5 440 aaPredicted RBP22.69■■□□□ 1.22
CLN3-209ENST00000561689 ANO9A1A5B4 782 aa22.69■■□□□ 1.22
CLN3-209ENST00000561689 GRID2IPA4D2P6 1211 aa22.69■■□□□ 1.22
CLN3-209ENST00000561689 DYNC1I1O14576 645 aa22.69■■□□□ 1.22
CLN3-209ENST00000561689 XPOTO43592 962 aaKnown RBP22.69■■□□□ 1.22
CLN3-209ENST00000561689 UNGP13051 313 aaPredicted RBP22.69■■□□□ 1.22
CLN3-209ENST00000561689 NAA35Q5VZE5 725 aa22.69■■□□□ 1.22
CLN3-209ENST00000561689 AGMOQ6ZNB7 445 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms