RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 NCANO14594 1321 aa17.94■□□□□ 0.46
CLN3-208ENST00000561505 SFI1A8K8P3 1242 aa17.93■□□□□ 0.46
CLN3-208ENST00000561505 PRR5-ARHGAP8B1AHC4 643 aa17.93■□□□□ 0.46
CLN3-208ENST00000561505 SLC16A4O15374 487 aa17.93■□□□□ 0.46
CLN3-208ENST00000561505 PAPSS2O95340 614 aaPredicted RBP17.93■□□□□ 0.46
CLN3-208ENST00000561505 CHRNB1P11230 501 aa17.93■□□□□ 0.46
CLN3-208ENST00000561505 CDC25AP30304 524 aa17.93■□□□□ 0.46
CLN3-208ENST00000561505 NRLP54845 237 aa17.93■□□□□ 0.46
CLN3-208ENST00000561505 ARHGAP8P85298 464 aa17.93■□□□□ 0.46
CLN3-208ENST00000561505 FCHO2Q0JRZ9 810 aa17.93■□□□□ 0.46
CLN3-208ENST00000561505 NOLC1Q14978 699 aaKnown RBP eCLIP17.93■□□□□ 0.46
CLN3-208ENST00000561505 TSSK4Q6SA08 328 aa17.93■□□□□ 0.46
CLN3-208ENST00000561505 RNF19BQ6ZMZ0 732 aa17.93■□□□□ 0.46
CLN3-208ENST00000561505 TMC8Q8IU68 726 aa17.93■□□□□ 0.46
CLN3-208ENST00000561505 MSANTD3Q96H12 275 aa17.93■□□□□ 0.46
CLN3-208ENST00000561505 PNMA5Q96PV4 448 aa17.93■□□□□ 0.46
CLN3-208ENST00000561505 TSPAN18Q96SJ8 248 aa17.93■□□□□ 0.46
CLN3-208ENST00000561505 HINFPQ9BQA5 517 aa17.93■□□□□ 0.46
CLN3-208ENST00000561505 NCDNQ9UBB6 729 aa17.93■□□□□ 0.46
CLN3-208ENST00000561505 FAM189A1O60320 539 aa17.92■□□□□ 0.46
CLN3-208ENST00000561505 CLTAP09496 248 aa17.92■□□□□ 0.46
CLN3-208ENST00000561505 MCM4P33991 863 aa17.92■□□□□ 0.46
CLN3-208ENST00000561505 SLC12A3P55017 1021 aa17.92■□□□□ 0.46
CLN3-208ENST00000561505 ARPP19P56211 112 aa17.92■□□□□ 0.46
CLN3-208ENST00000561505 TWF1Q12792 350 aa17.92■□□□□ 0.46
CLN3-208ENST00000561505 GPR17Q13304 367 aa17.92■□□□□ 0.46
CLN3-208ENST00000561505 GRM2Q14416 872 aa17.92■□□□□ 0.46
CLN3-208ENST00000561505 DTHD1Q6ZMT9 781 aa17.92■□□□□ 0.46
CLN3-208ENST00000561505 ELMOD1Q8N336 334 aa17.92■□□□□ 0.46
CLN3-208ENST00000561505 SHKBP1Q8TBC3 707 aa17.92■□□□□ 0.46
CLN3-208ENST00000561505 MKNK1Q9BUB5 465 aa17.92■□□□□ 0.46
CLN3-208ENST00000561505 DNAJC25Q9H1X3 360 aa17.92■□□□□ 0.46
CLN3-208ENST00000561505 HSFX1Q9UBD0 423 aa17.92■□□□□ 0.46
CLN3-208ENST00000561505 TUBGCP4Q9UGJ1 667 aa17.92■□□□□ 0.46
CLN3-208ENST00000561505 CLDN3O15551 220 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 PIGRP01833 764 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 SCP2P22307 547 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 PAX3P23760 479 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 WEE1P30291 646 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 GDI1P31150 447 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 VIPR2P41587 438 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 SMTNP53814 917 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 ATXN1P54253 815 aaKnown RBP17.91■□□□□ 0.46
CLN3-208ENST00000561505 NCKAP1LP55160 1127 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 ATP2C1P98194 919 aaPredicted RBP17.91■□□□□ 0.46
CLN3-208ENST00000561505 LMNB2Q03252 620 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 GAS6Q14393 721 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 ERICH6BQ5W0A0 696 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 C1orf228Q6PIY5 440 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 CELF5Q8N6W0 485 aaKnown RBP17.91■□□□□ 0.46
CLN3-208ENST00000561505 ZSCAN18Q8TBC5 510 aaPredicted RBP17.91■□□□□ 0.46
CLN3-208ENST00000561505 FAM3CQ92520 227 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 RSPRY1Q96DX4 576 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 CRISPLD1Q9H336 500 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 ASAH2Q9NR71 780 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 PPP4R2Q9NY27 417 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 YIPF1Q9Y548 306 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 PIAS3Q9Y6X2 628 aa17.91■□□□□ 0.46
CLN3-208ENST00000561505 OR6C75A6NL08 312 aa17.9■□□□□ 0.46
CLN3-208ENST00000561505 CHADO15335 359 aa17.9■□□□□ 0.46
CLN3-208ENST00000561505 TYMPP19971 482 aa17.9■□□□□ 0.46
CLN3-208ENST00000561505 CCR3P51677 355 aa17.9■□□□□ 0.46
CLN3-208ENST00000561505 YWHAHQ04917 246 aaPredicted RBP17.9■□□□□ 0.46
CLN3-208ENST00000561505 STRN3Q13033 797 aa17.9■□□□□ 0.46
CLN3-208ENST00000561505 MYBPC2Q14324 1141 aa17.9■□□□□ 0.46
CLN3-208ENST00000561505 KYAT1Q16773 422 aa17.9■□□□□ 0.46
CLN3-208ENST00000561505 SEZ6Q53EL9 994 aa17.9■□□□□ 0.46
CLN3-208ENST00000561505 ARSHQ5FYA8 562 aa17.9■□□□□ 0.46
CLN3-208ENST00000561505 CENPPQ6IPU0 288 aa17.9■□□□□ 0.46
CLN3-208ENST00000561505 FAM184AQ8NB25 1140 aa17.9■□□□□ 0.46
CLN3-208ENST00000561505 SECISBP2LQ93073 1101 aaKnown RBP17.9■□□□□ 0.46
CLN3-208ENST00000561505 LMAN1LQ9HAT1 526 aa17.9■□□□□ 0.46
CLN3-208ENST00000561505 PARD6AQ9NPB6 346 aa17.9■□□□□ 0.46
CLN3-208ENST00000561505 UBQLN1Q9UMX0 589 aaKnown RBP17.9■□□□□ 0.46
CLN3-208ENST00000561505 HEPACAM2A8MVW5 462 aa17.89■□□□□ 0.45
CLN3-208ENST00000561505 ZNF263O14978 683 aa17.89■□□□□ 0.45
CLN3-208ENST00000561505 SLC26A4O43511 780 aa17.89■□□□□ 0.45
CLN3-208ENST00000561505 LRP3O75074 770 aa17.89■□□□□ 0.45
CLN3-208ENST00000561505 CXCL8P10145 99 aa17.89■□□□□ 0.45
CLN3-208ENST00000561505 MARCKSP29966 332 aaPredicted RBP17.89■□□□□ 0.45
CLN3-208ENST00000561505 HOXA6P31267 233 aa17.89■□□□□ 0.45
CLN3-208ENST00000561505 PLD1Q13393 1074 aa17.89■□□□□ 0.45
CLN3-208ENST00000561505 GNL2Q13823 731 aaKnown RBP17.89■□□□□ 0.45
CLN3-208ENST00000561505 TEAD2Q15562 447 aa17.89■□□□□ 0.45
CLN3-208ENST00000561505 TMEM119Q4V9L6 283 aa17.89■□□□□ 0.45
CLN3-208ENST00000561505 WDR44Q5JSH3 913 aa17.89■□□□□ 0.45
CLN3-208ENST00000561505 SPEM1Q8N4L4 309 aa17.89■□□□□ 0.45
CLN3-208ENST00000561505 OBP2AQ9NY56 170 aa17.89■□□□□ 0.45
CLN3-208ENST00000561505 NDRG2Q9UN36 371 aaKnown RBP17.89■□□□□ 0.45
CLN3-208ENST00000561505 ASB3Q9Y575 518 aa17.89■□□□□ 0.45
CLN3-208ENST00000561505 EPG5Q9HCE0 2579 aa17.89■□□□□ 0.45
CLN3-208ENST00000561505 KMT2BQ9UMN6 2715 aaPredicted RBP17.88■□□□□ 0.45
CLN3-208ENST00000561505 MYBPHLA2RUH7 354 aa17.88■□□□□ 0.45
CLN3-208ENST00000561505 H0YCG3 227 aa17.88■□□□□ 0.45
CLN3-208ENST00000561505 MYL4P12829 197 aa17.88■□□□□ 0.45
CLN3-208ENST00000561505 CPB1P15086 417 aa17.88■□□□□ 0.45
CLN3-208ENST00000561505 GJA1P17302 382 aa17.88■□□□□ 0.45
CLN3-208ENST00000561505 ZNF131P52739 623 aa17.88■□□□□ 0.45
CLN3-208ENST00000561505 PPP2R5DQ14738 602 aa17.88■□□□□ 0.45
CLN3-208ENST00000561505 RILPL1Q5EBL4 403 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms