RNA–Protein interactions for RNA: ENST00000558739.1

SMAD3-206, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-206ENST00000558739 ANTXRLA6NF34 631 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 TMEM189-UBE2V1I3L0A0 370 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 ASAP2O43150 1006 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 PLA2G2AP14555 144 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 CYP4A11Q02928 519 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 NCBP1Q09161 790 aaKnown RBP13.11□□□□□ -0.31
SMAD3-206ENST00000558739 TRIM61Q5EBN2 209 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 TRIM68Q6AZZ1 485 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 IQCEQ6IPM2 695 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 SYNE3Q6ZMZ3 975 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 ARMCX6Q7L4S7 300 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 ELMOD1Q8N336 334 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 RUFY2Q8WXA3 655 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 PIGKQ92643 395 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 ZNF512Q96ME7 567 aaPredicted RBP13.11□□□□□ -0.31
SMAD3-206ENST00000558739 PPP1R10Q96QC0 940 aaKnown RBP13.11□□□□□ -0.31
SMAD3-206ENST00000558739 POLR3CQ9BUI4 534 aaPredicted RBP13.11□□□□□ -0.31
SMAD3-206ENST00000558739 DNAJC25Q9H1X3 360 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 CRISPLD1Q9H336 500 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 SLC32A1Q9H598 525 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 MBD1Q9UIS9 605 aaPredicted RBP13.11□□□□□ -0.31
SMAD3-206ENST00000558739 FBXL5Q9UKA1 691 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 YIPF1Q9Y548 306 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 KNL1Q8NG31 2342 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 PCDH15Q96QU1 1955 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 COL6A6A6NMZ7 2263 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 KLF18A0A0U1RQI7 1052 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 ENGP17813 658 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 GNA11P29992 359 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 USP11P51784 963 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 SEMA3BQ13214 749 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 CTTNQ14247 550 aaKnown RBP13.1□□□□□ -0.31
SMAD3-206ENST00000558739 MXD4Q14582 209 aaPredicted RBP13.1□□□□□ -0.31
SMAD3-206ENST00000558739 KARSQ15046 597 aaKnown RBP13.1□□□□□ -0.31
SMAD3-206ENST00000558739 ITPRIPL2Q3MIP1 535 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 ARHGAP29Q52LW3 1261 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 EEF1DP3Q658K8 133 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 CREB3L3Q68CJ9 461 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 GAREM2Q75VX8 874 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 TMEM130Q8N3G9 435 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 CAMKK1Q8N5S9 505 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 PNPLA1Q8N8W4 532 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 DAGLBQ8NCG7 672 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 OR2I1PQ8NGU4 316 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 RPLP0P6Q8NHW5 317 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 E2F7Q96AV8 911 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 LSG1Q9H089 658 aaKnown RBP13.1□□□□□ -0.31
SMAD3-206ENST00000558739 CCDC86Q9H6F5 360 aaKnown RBP13.1□□□□□ -0.31
SMAD3-206ENST00000558739 HPS4Q9NQG7 708 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 TMEM74BQ9NUR3 256 aa13.1□□□□□ -0.31
SMAD3-206ENST00000558739 CYP3A7-CYP3A51PA0A087WV96 503 aa13.09□□□□□ -0.31
SMAD3-206ENST00000558739 APBB3O95704 486 aa13.09□□□□□ -0.31
SMAD3-206ENST00000558739 CYP3A7P24462 503 aa13.09□□□□□ -0.31
SMAD3-206ENST00000558739 ARL2P36404 184 aa13.09□□□□□ -0.31
SMAD3-206ENST00000558739 DHPSP49366 369 aaPredicted RBP13.09□□□□□ -0.31
SMAD3-206ENST00000558739 DGKEP52429 567 aa13.09□□□□□ -0.31
SMAD3-206ENST00000558739 PPP2R5CQ13362 524 aa13.09□□□□□ -0.31
SMAD3-206ENST00000558739 TFDP1Q14186 410 aa13.09□□□□□ -0.31
SMAD3-206ENST00000558739 RNF19BQ6ZMZ0 732 aa13.09□□□□□ -0.31
SMAD3-206ENST00000558739 LURAP1LQ8IV03 231 aa13.09□□□□□ -0.31
SMAD3-206ENST00000558739 FRMD1Q8N878 549 aa13.09□□□□□ -0.31
SMAD3-206ENST00000558739 RIN3Q8TB24 985 aa13.09□□□□□ -0.31
SMAD3-206ENST00000558739 DYDC2Q96IM9 177 aa13.09□□□□□ -0.31
SMAD3-206ENST00000558739 CAMK1GQ96NX5 476 aa13.09□□□□□ -0.31
SMAD3-206ENST00000558739 POLR3FQ9H1D9 316 aaPredicted RBP13.09□□□□□ -0.31
SMAD3-206ENST00000558739 GPRC5CQ9NQ84 441 aa13.09□□□□□ -0.31
SMAD3-206ENST00000558739 NAP1L2Q9ULW6 460 aaPredicted RBP13.09□□□□□ -0.31
SMAD3-206ENST00000558739 SOAT2O75908 522 aa13.08□□□□□ -0.32
SMAD3-206ENST00000558739 P4HBP07237 508 aaKnown RBP13.08□□□□□ -0.32
SMAD3-206ENST00000558739 PTGER3P43115 390 aa13.08□□□□□ -0.32
SMAD3-206ENST00000558739 C19orf57Q0VDD7 668 aa13.08□□□□□ -0.32
SMAD3-206ENST00000558739 GRSF1Q12849 480 aaKnown RBP eCLIP13.08□□□□□ -0.32
SMAD3-206ENST00000558739 DMC1Q14565 340 aa13.08□□□□□ -0.32
SMAD3-206ENST00000558739 CTXN3Q4LDR2 81 aa13.08□□□□□ -0.32
SMAD3-206ENST00000558739 MARCH9Q86YJ5 346 aa13.08□□□□□ -0.32
SMAD3-206ENST00000558739 C4orf19Q8IY42 314 aa13.08□□□□□ -0.32
SMAD3-206ENST00000558739 CCDC12Q8WUD4 166 aaPredicted RBP13.08□□□□□ -0.32
SMAD3-206ENST00000558739 PGLYRP2Q96PD5 576 aa13.08□□□□□ -0.32
SMAD3-206ENST00000558739 NFKBIZQ9BYH8 718 aa13.08□□□□□ -0.32
SMAD3-206ENST00000558739 SLKQ9H2G2 1235 aaPredicted RBP13.08□□□□□ -0.32
SMAD3-206ENST00000558739 EBF3Q9H4W6 596 aa13.08□□□□□ -0.32
SMAD3-206ENST00000558739 EBF1Q9UH73 591 aa13.08□□□□□ -0.32
SMAD3-206ENST00000558739 DDX25Q9UHL0 483 aaKnown RBP13.08□□□□□ -0.32
SMAD3-206ENST00000558739 PPME1Q9Y570 386 aa13.08□□□□□ -0.32
SMAD3-206ENST00000558739 BOD1L1Q8NFC6 3051 aa13.07□□□□□ -0.32
SMAD3-206ENST00000558739 NBPF19A0A087WUL8 3843 aa13.07□□□□□ -0.32
SMAD3-206ENST00000558739 LRRK2Q5S007 2527 aa13.07□□□□□ -0.32
SMAD3-206ENST00000558739 ZNF638Q14966 1978 aaKnown RBP13.07□□□□□ -0.32
SMAD3-206ENST00000558739 A0A087WWV3 80 aa13.07□□□□□ -0.32
SMAD3-206ENST00000558739 LRRIQ4A6NIV6 560 aa13.07□□□□□ -0.32
SMAD3-206ENST00000558739 DPYSL4O14531 572 aa13.07□□□□□ -0.32
SMAD3-206ENST00000558739 TRDMT1O14717 391 aaKnown RBP13.07□□□□□ -0.32
SMAD3-206ENST00000558739 ATG13O75143 517 aa13.07□□□□□ -0.32
SMAD3-206ENST00000558739 OR4Q2P0C623 313 aa13.07□□□□□ -0.32
SMAD3-206ENST00000558739 ARSAP15289 507 aa13.07□□□□□ -0.32
SMAD3-206ENST00000558739 CDR1P51861 262 aa13.07□□□□□ -0.32
SMAD3-206ENST00000558739 CYP4F8P98187 520 aa13.07□□□□□ -0.32
SMAD3-206ENST00000558739 EXOSC10Q01780 885 aaKnown RBP13.07□□□□□ -0.32
SMAD3-206ENST00000558739 MRPL58Q14197 206 aaKnown RBP13.07□□□□□ -0.32
SMAD3-206ENST00000558739 GPR158Q5T848 1215 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms