RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 LMO3Q8TAP4 145 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 GDPD5Q8WTR4 605 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 NDST4Q9H3R1 872 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 APOBEC3GQ9HC16 384 aaKnown RBP13.8□□□□□ -0.2
SHMT2-227ENST00000557269 POLIQ9UNA4 740 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 COQ4Q9Y3A0 265 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 NUB1Q9Y5A7 615 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 PCDHGC5Q9Y5F6 944 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-227ENST00000557269 KPNA7A9QM74 516 aa13.79□□□□□ -0.2
SHMT2-227ENST00000557269 PMM2O15305 246 aa13.79□□□□□ -0.2
SHMT2-227ENST00000557269 CSPG5O95196 566 aa13.79□□□□□ -0.2
SHMT2-227ENST00000557269 ASS1P00966 412 aaKnown RBP13.79□□□□□ -0.2
SHMT2-227ENST00000557269 ERVFC1P60507 584 aa13.79□□□□□ -0.2
SHMT2-227ENST00000557269 APBA1Q02410 837 aa13.79□□□□□ -0.2
SHMT2-227ENST00000557269 GRIN2CQ14957 1233 aa13.79□□□□□ -0.2
SHMT2-227ENST00000557269 FAM171A1Q5VUB5 890 aa13.79□□□□□ -0.2
SHMT2-227ENST00000557269 FBXL13Q8NEE6 735 aa13.79□□□□□ -0.2
SHMT2-227ENST00000557269 POF1BQ8WVV4 589 aa13.79□□□□□ -0.2
SHMT2-227ENST00000557269 TMEM169Q96HH4 297 aa13.79□□□□□ -0.2
SHMT2-227ENST00000557269 SUSD3Q96L08 255 aa13.79□□□□□ -0.2
SHMT2-227ENST00000557269 SENP8Q96LD8 212 aa13.79□□□□□ -0.2
SHMT2-227ENST00000557269 FAM161BQ96MY7 647 aa13.79□□□□□ -0.2
SHMT2-227ENST00000557269 NAP1L5Q96NT1 182 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-227ENST00000557269 CRACR2AQ9BSW2 395 aa13.79□□□□□ -0.2
SHMT2-227ENST00000557269 C11orf84Q9BUA3 381 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-227ENST00000557269 RAB20Q9NX57 234 aa13.79□□□□□ -0.2
SHMT2-227ENST00000557269 TIMM13Q9Y5L4 95 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-227ENST00000557269 GOLGA6L19H0YKK7 550 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 M0QZQ0 153 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 CYB561D2O14569 222 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 STAU1O95793 577 aaKnown RBP13.78□□□□□ -0.2
SHMT2-227ENST00000557269 FGFR3P22607 806 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 TKTP29401 623 aaKnown RBP13.78□□□□□ -0.2
SHMT2-227ENST00000557269 IRS1P35568 1242 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 PNPLA4P41247 253 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 KRT17Q04695 432 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 KCNMA1Q12791 1236 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 LRMPQ12912 555 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 PTPN21Q16825 1174 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 SGSM1Q2NKQ1 1148 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 ZNF699Q32M78 642 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 WDR72Q3MJ13 1102 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 SV2CQ496J9 727 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 RTP2Q5QGT7 225 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 DSTYKQ6XUX3 929 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 VPS52Q8N1B4 723 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 EHBP1Q8NDI1 1231 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 AUTS2Q8WXX7 1259 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 TATDN2Q93075 761 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 ZNF560Q96MR9 790 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 SDCBP2Q9H190 292 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 PRDM12Q9H4Q4 367 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 CHST7Q9NS84 486 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 GDAP2Q9NXN4 497 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 NXF1Q9UBU9 619 aaKnown RBP13.78□□□□□ -0.2
SHMT2-227ENST00000557269 SNX9Q9Y5X1 595 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 SF3B1O75533 1304 aaKnown RBP eCLIP13.78□□□□□ -0.25e-8■■■■■ 37.4
SHMT2-227ENST00000557269 CHD7Q9P2D1 2997 aa13.78□□□□□ -0.2
SHMT2-227ENST00000557269 PES1O00541 588 aaKnown RBP13.77□□□□□ -0.21
SHMT2-227ENST00000557269 P4HA2O15460 535 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 TEX33O43247 280 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 HCRTO43612 131 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 N4BP1O75113 896 aaKnown RBP13.77□□□□□ -0.21
SHMT2-227ENST00000557269 SOD2P04179 222 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 SLC9A1P19634 815 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 ATICP31939 592 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 KLK7P49862 253 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 COL4A4P53420 1690 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-227ENST00000557269 FANCCQ00597 558 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 MYO1EQ12965 1108 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 SOWAHAQ2M3V2 549 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 KIAA0319Q5VV43 1072 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 WSCD1Q658N2 575 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 DPY19L2P1Q6NXN4 242 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 Q7L0L9 218 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 LIMS2Q7Z4I7 341 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 CEP57Q86XR8 500 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 HERC2P3Q9BVR0 1158 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 INTS2Q9H0H0 1204 aaKnown RBP13.77□□□□□ -0.21
SHMT2-227ENST00000557269 ZBP1Q9H171 429 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 VRTNQ9H8Y1 702 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 PCDHB8Q9UN66 801 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 LZTS1Q9Y250 596 aa13.77□□□□□ -0.21
SHMT2-227ENST00000557269 R3HCC1Q9Y3T6 440 aaKnown RBP13.77□□□□□ -0.21
SHMT2-227ENST00000557269 VWA8A3KMH1 1905 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 TMEM265A0A087WTH1 108 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 CARNS1A5YM72 827 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 LGALS16A8MUM7 142 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 C2CD2LO14523 706 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 FSCN2O14926 492 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 AP5Z1O43299 807 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 TRAPPC3O43617 180 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 LILRB3O75022 631 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 PON1P27169 355 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 ASPAP45381 313 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 RAP1GAPP47736 663 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 FXR1P51114 621 aaKnown RBP eCLIP13.76□□□□□ -0.21
SHMT2-227ENST00000557269 CDH8P55286 799 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 TPM4P67936 248 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms