RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-221ENST00000555773 M0QZQ0 153 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 SPTLC1O15269 473 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 AP5Z1O43299 807 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 KIF4AO95239 1232 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 LINC00271P0C7V0 271 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 RFX1P22670 979 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 TBXAS1P24557 533 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-221ENST00000555773 PBX1P40424 430 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 ZNF75DP51815 510 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 TNNC1P63316 161 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 NOP14P78316 857 aaKnown RBP13.38□□□□□ -0.27
SHMT2-221ENST00000555773 PLCB3Q01970 1234 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 GCNT1Q02742 428 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 KRT17Q04695 432 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 LRIT3Q3SXY7 679 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 TIGD5Q53EQ6 642 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 KLHDC7AQ5VTJ3 777 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 PRPF38BQ5VTL8 546 aaKnown RBP13.38□□□□□ -0.27
SHMT2-221ENST00000555773 ENOSF1Q7L5Y1 443 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 LIMS2Q7Z4I7 341 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 TMEM130Q8N3G9 435 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 TTC39CQ8N584 583 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 TOP6BLQ8N6T0 577 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 C3orf58Q8NDZ4 430 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 SPATA18Q8TC71 538 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 RABGGTAQ92696 567 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 JAKMIP2Q96AA8 810 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 TMEM169Q96HH4 297 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 MRFAP1L1Q96HT8 127 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 SUSD3Q96L08 255 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 SENP8Q96LD8 212 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 PCMTD1Q96MG8 357 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-221ENST00000555773 TGS1Q96RS0 853 aaKnown RBP13.38□□□□□ -0.27
SHMT2-221ENST00000555773 PI4K2AQ9BTU6 479 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 NUP58Q9BVL2 599 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 PBX4Q9BYU1 374 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 EDEM3Q9BZQ6 932 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 APOBEC3GQ9HC16 384 aaKnown RBP13.38□□□□□ -0.27
SHMT2-221ENST00000555773 CACNG4Q9UBN1 327 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 APEX2Q9UBZ4 518 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 PUF60Q9UHX1 559 aaKnown RBP13.38□□□□□ -0.27
SHMT2-221ENST00000555773 FBXL5Q9UKA1 691 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 DSEQ9UL01 958 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 SNX9Q9Y5X1 595 aa13.38□□□□□ -0.27
SHMT2-221ENST00000555773 SF3B1O75533 1304 aaKnown RBP eCLIP13.38□□□□□ -0.275e-8■■■■■ 37.4
SHMT2-221ENST00000555773 CITO14578 2027 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 NT5C1B-RDH14C9J2C7 533 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 C5orf67F2Z3F1 127 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 CYB561D2O14569 222 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 SYN3O14994 580 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 HUS1O60921 280 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 LRRN2O75325 713 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 CA3P07451 260 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 MYOGP15173 224 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 TYMPP19971 482 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 MFAP3P55082 362 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 ERVK-21P61565 698 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 FIGNQ5HY92 759 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 PHLDB3Q6NSJ2 640 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 DPY19L2P1Q6NXN4 242 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 DDX53Q86TM3 631 aaKnown RBP13.37□□□□□ -0.27
SHMT2-221ENST00000555773 TMEM86AQ8N2M4 240 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 APPL2Q8NEU8 664 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 NEK11Q8NG66 645 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 TATDN2Q93075 761 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 LSM14BQ9BX40 385 aaKnown RBP13.37□□□□□ -0.27
SHMT2-221ENST00000555773 NIF3L1Q9GZT8 377 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 SLC28A3Q9HAS3 691 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 SIX2Q9NPC8 291 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 MARCH5Q9NX47 278 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 NXF1Q9UBU9 619 aaKnown RBP13.37□□□□□ -0.27
SHMT2-221ENST00000555773 PCDHB8Q9UN66 801 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 YBX2Q9Y2T7 364 aaKnown RBP13.37□□□□□ -0.27
SHMT2-221ENST00000555773 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.37□□□□□ -0.27
SHMT2-221ENST00000555773 ITIH6Q6UXX5 1313 aa13.37□□□□□ -0.27
SHMT2-221ENST00000555773 TACC1O75410 805 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 FGF18O76093 207 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 CLSTN1O94985 981 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 EFEMP2O95967 443 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 CYP11A1P05108 521 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 ITGB1P05556 798 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 ODC1P11926 461 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 UCHL3P15374 230 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 IGFBP6P24592 240 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-221ENST00000555773 PBX2P40425 430 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 PBX3P40426 434 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 BRCC3P46736 316 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 YWHAEP62258 255 aaKnown RBP13.36□□□□□ -0.27
SHMT2-221ENST00000555773 TAP1Q03518 808 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 LRMPQ12912 555 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 CUL2Q13617 745 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 SPECC1LQ69YQ0 1117 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 SPOPLQ6IQ16 392 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 FUT10Q6P4F1 479 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 METTL23Q86XA0 190 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 VSTM4Q8IW00 320 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 GPR65Q8IYL9 337 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 MMS19Q96T76 1030 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 BCO2Q9BYV7 579 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 UBE2TQ9NPD8 197 aaPredicted RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms