RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 MARSP56192 900 aaKnown RBP12.04□□□□□ -0.48
SHMT2-216ENST00000554975 GABPB1Q06547 395 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-216ENST00000554975 BMS1Q14692 1282 aaKnown RBP12.04□□□□□ -0.48
SHMT2-216ENST00000554975 SPA17Q15506 151 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 KIAA0319Q5VV43 1072 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 ANKRD40Q6AI12 368 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 FBXO38Q6PIJ6 1188 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 C15orf39Q6ZRI6 1047 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 MIER3Q7Z3K6 550 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 SRGAP1Q7Z6B7 1085 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 GPBP1Q86WP2 473 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 LRRC15Q8TF66 581 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 HAS1Q92839 578 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 WDR24Q96S15 920 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 EIF3CQ99613 913 aaKnown RBP12.04□□□□□ -0.48
SHMT2-216ENST00000554975 CARD6Q9BX69 1037 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 MRPL9Q9BYD2 267 aaKnown RBP12.04□□□□□ -0.48
SHMT2-216ENST00000554975 NDST4Q9H3R1 872 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 UNC45AQ9H3U1 944 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 WDR6Q9NNW5 1121 aaKnown RBP12.04□□□□□ -0.48
SHMT2-216ENST00000554975 PARD6AQ9NPB6 346 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 LZTFL1Q9NQ48 299 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 MAN1C1Q9NR34 630 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 PANK4Q9NVE7 773 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 TBC1D13Q9NVG8 400 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 EPS15L1Q9UBC2 864 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 AKT3Q9Y243 479 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 COL4A3BPQ9Y5P4 624 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 NOTCH4Q99466 2003 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 CLUHO75153 1309 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 FRYQ5TBA9 3013 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 FASNP49327 2511 aaKnown RBP12.03□□□□□ -0.48
SHMT2-216ENST00000554975 ZFYVE26Q68DK2 2539 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 CCDC195A0A1B0GUA6 201 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 FRMD3A2A2Y4 597 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 ERLIN1O75477 346 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 RFPL2O75678 378 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 PLA2G4BP0C869 781 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 GAP43P17677 238 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 MCM3P25205 808 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 RPA1P27694 616 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 SFNP31947 248 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 GPC3P51654 580 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 GIT2Q14161 759 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 MTF1Q14872 753 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 CCDC40Q4G0X9 1142 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 ZNF569Q5MCW4 686 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 DCLRE1AQ6PJP8 1040 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 STXBP4Q6ZWJ1 553 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 DYMQ7RTS9 669 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 ZNF280BQ86YH2 543 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 FMNL3Q8IVF7 1028 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 ETNPPLQ8TBG4 499 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 RPP25Q9BUL9 199 aaKnown RBP12.03□□□□□ -0.48
SHMT2-216ENST00000554975 SLC39A2Q9NP94 309 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 CDV3Q9UKY7 258 aaKnown RBP12.03□□□□□ -0.48
SHMT2-216ENST00000554975 INPP5FQ9Y2H2 1132 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 MTF2Q9Y483 593 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-216ENST00000554975 DAAM1Q9Y4D1 1078 aa12.03□□□□□ -0.48
SHMT2-216ENST00000554975 INPPL1O15357 1258 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 TBCAO75347 108 aaKnown RBP12.02□□□□□ -0.49
SHMT2-216ENST00000554975 PSMD10O75832 226 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 DARSP14868 501 aaKnown RBP12.02□□□□□ -0.49
SHMT2-216ENST00000554975 PHKA2P46019 1235 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 AFF1P51825 1210 aaKnown RBP12.02□□□□□ -0.49
SHMT2-216ENST00000554975 DRP2Q13474 957 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 BRD3Q15059 726 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 ERCC6LQ2NKX8 1250 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 ZCWPW2Q504Y3 356 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 TEX35Q5T0J7 233 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 EFCAB12Q6NXP0 572 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 ZC3H3Q8IXZ2 948 aaKnown RBP12.02□□□□□ -0.49
SHMT2-216ENST00000554975 ACRBPQ8NEB7 543 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 CMASQ8NFW8 434 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-216ENST00000554975 NEK11Q8NG66 645 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 BBXQ8WY36 941 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-216ENST00000554975 JAKMIP2Q96AA8 810 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 ZNF707Q96C28 371 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-216ENST00000554975 DNAJC19Q96DA6 116 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 FAM167AQ96KS9 214 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 ALS2CR12Q96Q35 445 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 POLR3CQ9BUI4 534 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-216ENST00000554975 TUFT1Q9NNX1 390 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 NRBP2Q9NSY0 501 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 KCND2Q9NZV8 630 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 SMG5Q9UPR3 1016 aaKnown RBP12.02□□□□□ -0.49
SHMT2-216ENST00000554975 DNM3Q9UQ16 869 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 MAFBQ9Y5Q3 323 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-216ENST00000554975 ATP8B3O60423 1300 aa12.02□□□□□ -0.49
SHMT2-216ENST00000554975 CEP295Q9C0D2 2601 aa12.01□□□□□ -0.49
SHMT2-216ENST00000554975 F5P12259 2224 aa12.01□□□□□ -0.49
SHMT2-216ENST00000554975 SDK1Q7Z5N4 2213 aa12.01□□□□□ -0.49
SHMT2-216ENST00000554975 SSU72P8A0A1W2PR75 194 aa12.01□□□□□ -0.49
SHMT2-216ENST00000554975 CTAGE15A4D2H0 777 aa12.01□□□□□ -0.49
SHMT2-216ENST00000554975 CCDC151A5D8V7 595 aa12.01□□□□□ -0.49
SHMT2-216ENST00000554975 ANHXE9PGG2 379 aa12.01□□□□□ -0.49
SHMT2-216ENST00000554975 C2CD2LO14523 706 aa12.01□□□□□ -0.49
SHMT2-216ENST00000554975 CETN3O15182 167 aa12.01□□□□□ -0.49
SHMT2-216ENST00000554975 CALUO43852 315 aaPredicted RBP12.01□□□□□ -0.49
SHMT2-216ENST00000554975 DDHD2O94830 711 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms