RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 LGALS16A8MUM7 142 aa13.16□□□□□ -0.3
SHMT2-209ENST00000553949 KPNA7A9QM74 516 aa13.16□□□□□ -0.3
SHMT2-209ENST00000553949 H3BNC9 293 aa13.16□□□□□ -0.3
SHMT2-209ENST00000553949 PES1O00541 588 aaKnown RBP13.16□□□□□ -0.3
SHMT2-209ENST00000553949 LRRN2O75325 713 aa13.16□□□□□ -0.3
SHMT2-209ENST00000553949 CLSTN1O94985 981 aa13.16□□□□□ -0.3
SHMT2-209ENST00000553949 ASS1P00966 412 aaKnown RBP13.16□□□□□ -0.3
SHMT2-209ENST00000553949 BRCC3P46736 316 aa13.16□□□□□ -0.3
SHMT2-209ENST00000553949 ELAVL2Q12926 359 aaKnown RBP13.16□□□□□ -0.3
SHMT2-209ENST00000553949 ZNF699Q32M78 642 aa13.16□□□□□ -0.3
SHMT2-209ENST00000553949 DSTYKQ6XUX3 929 aa13.16□□□□□ -0.3
SHMT2-209ENST00000553949 RNF168Q8IYW5 571 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-209ENST00000553949 CCDC150Q8NCX0 1101 aa13.16□□□□□ -0.3
SHMT2-209ENST00000553949 TAF4BQ92750 862 aa13.16□□□□□ -0.3
SHMT2-209ENST00000553949 SUSD3Q96L08 255 aa13.16□□□□□ -0.3
SHMT2-209ENST00000553949 PI4K2AQ9BTU6 479 aa13.16□□□□□ -0.3
SHMT2-209ENST00000553949 IMPG2Q9BZV3 1241 aa13.16□□□□□ -0.3
SHMT2-209ENST00000553949 VRTNQ9H8Y1 702 aa13.16□□□□□ -0.3
SHMT2-209ENST00000553949 ALG13Q9NP73 1137 aaKnown RBP13.16□□□□□ -0.3
SHMT2-209ENST00000553949 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.16□□□□□ -0.3
SHMT2-209ENST00000553949 PDCD11Q14690 1871 aaKnown RBP13.16□□□□□ -0.3
SHMT2-209ENST00000553949 TRIP11Q15643 1979 aa13.16□□□□□ -0.3
SHMT2-209ENST00000553949 CHD9Q3L8U1 2897 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 TRIOBPQ9H2D6 2365 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 GBF1Q92538 1859 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 GTPBP10A4D1E9 387 aaKnown RBP13.15□□□□□ -0.3
SHMT2-209ENST00000553949 EPOPA6NHQ4 379 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 M0QZQ0 153 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 CYB561D2O14569 222 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 GRM6O15303 877 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 SERPINC1P01008 464 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 NOP14P78316 857 aaKnown RBP13.15□□□□□ -0.3
SHMT2-209ENST00000553949 FANCCQ00597 558 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 UBE3AQ05086 875 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 GPM6BQ13491 265 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 WDR72Q3MJ13 1102 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 HABP4Q5JVS0 413 aaKnown RBP13.15□□□□□ -0.3
SHMT2-209ENST00000553949 FAM171A1Q5VUB5 890 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 SPOPLQ6IQ16 392 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 GBP6Q6ZN66 633 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 TAS1R1Q7RTX1 841 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 EHBP1Q8NDI1 1231 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 LMO3Q8TAP4 145 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 SPPL3Q8TCT6 385 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 ELMO3Q96BJ8 720 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 LRCH3Q96II8 777 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 SENP8Q96LD8 212 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 CRACR2AQ9BSW2 395 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 HERC2P3Q9BVR0 1158 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 INTS2Q9H0H0 1204 aaKnown RBP13.15□□□□□ -0.3
SHMT2-209ENST00000553949 TTYH1Q9H313 450 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-209ENST00000553949 APOBEC3GQ9HC16 384 aaKnown RBP13.15□□□□□ -0.3
SHMT2-209ENST00000553949 GDAP2Q9NXN4 497 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 GCNT4Q9P109 453 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 STK39Q9UEW8 545 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 PUF60Q9UHX1 559 aaKnown RBP13.15□□□□□ -0.3
SHMT2-209ENST00000553949 PCDHB8Q9UN66 801 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 LZTS1Q9Y250 596 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 SNX9Q9Y5X1 595 aa13.15□□□□□ -0.3
SHMT2-209ENST00000553949 SYN3O14994 580 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 SOD2P04179 222 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 ODC1P11926 461 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 FGFR3P22607 806 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 DNAJB1P25685 340 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 TKTP29401 623 aaKnown RBP13.14□□□□□ -0.31
SHMT2-209ENST00000553949 TNNC1P63316 161 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 UBXN1Q04323 297 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 EXOC3L4Q17RC7 722 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 USP41Q3LFD5 358 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 FILIP1LQ4L180 1135 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 ZNF667Q5HYK9 610 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 WDR44Q5JSH3 913 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 FKBP15Q5T1M5 1219 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-209ENST00000553949 VPS52Q8N1B4 723 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 POF1BQ8WVV4 589 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 B3GALT6Q96L58 329 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 NAP1L5Q96NT1 182 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-209ENST00000553949 RTN4Q9NQC3 1192 aaKnown RBP13.14□□□□□ -0.31
SHMT2-209ENST00000553949 CHST7Q9NS84 486 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 NXF1Q9UBU9 619 aaKnown RBP13.14□□□□□ -0.31
SHMT2-209ENST00000553949 POLIQ9UNA4 740 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 CHD7Q9P2D1 2997 aa13.14□□□□□ -0.31
SHMT2-209ENST00000553949 A0A1B0GTH6 734 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 ARHGEF37A1IGU5 675 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 RFXAPO00287 272 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 HUS1O60921 280 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 P4HA1P13674 534 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 SLC9A1P19634 815 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 TYMPP19971 482 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 PON1P27169 355 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 ASPAP45381 313 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 GLUD2P49448 558 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 KCNMA1Q12791 1236 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 LRMPQ12912 555 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 CAMK1Q14012 370 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 RTP2Q5QGT7 225 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 ZNF697Q5TEC3 545 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 KIAA1841Q6NSI8 718 aa13.13□□□□□ -0.31
SHMT2-209ENST00000553949 TRIM65Q6PJ69 517 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms