RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 LINGO3P0C6S8 592 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 ALADP13716 330 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 CCND1P24385 295 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 CTNNA1P35221 906 aaKnown RBP8.19□□□□□ -1.1
LIMA1-216ENST00000552909 HSD17B3P37058 310 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 PAPOLAP51003 745 aaKnown RBP8.19□□□□□ -1.1
LIMA1-216ENST00000552909 NLRP11P59045 1033 aaKnown RBP8.19□□□□□ -1.1
LIMA1-216ENST00000552909 PPARDQ03181 441 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 PSMD2Q13200 908 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 IKBKEQ14164 716 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 ZNF268Q14587 947 aaPredicted RBP8.19□□□□□ -1.1
LIMA1-216ENST00000552909 FAM117BQ6P1L5 589 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 IRF2BP1Q8IU81 584 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 KSR1Q8IVT5 923 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 NME8Q8N427 588 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 LRRC45Q96CN5 670 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 CEP170P1Q96L14 293 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 TSC22D3Q99576 134 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 OSMRQ99650 979 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 THAP9Q9H5L6 903 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 ZFATQ9P243 1243 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 PADI3Q9ULW8 664 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 KIAA1024Q9UPX6 916 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 AKT3Q9Y243 479 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 YBX2Q9Y2T7 364 aaKnown RBP8.19□□□□□ -1.1
LIMA1-216ENST00000552909 PCDHGC5Q9Y5F6 944 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 TRPV2Q9Y5S1 764 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 ABHD14A-ACY1A0A1B0GW23 586 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 MAFO75444 373 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-216ENST00000552909 ARHGEF15O94989 841 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 ZNF844Q08AG5 666 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 HLTFQ14527 1009 aaKnown RBP eCLIP8.18□□□□□ -1.1
LIMA1-216ENST00000552909 ITIH4Q14624 930 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 XKR9Q5GH70 373 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 POTEGQ6S5H5 508 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 SV2BQ7L1I2 683 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 SPRED2Q7Z698 418 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 RTN4RL1Q86UN2 441 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-216ENST00000552909 DEFB123Q8N688 67 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 SEPT8Q92599 483 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 MS4A14Q96JA4 679 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 KRT12Q99456 494 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 PAIP2Q9BPZ3 127 aaKnown RBP8.18□□□□□ -1.1
LIMA1-216ENST00000552909 TLR10Q9BXR5 811 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 MTIF3Q9H2K0 278 aaKnown RBP8.18□□□□□ -1.1
LIMA1-216ENST00000552909 ADAMTS10Q9H324 1103 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 CNOT10Q9H9A5 744 aaKnown RBP8.18□□□□□ -1.1
LIMA1-216ENST00000552909 PAPOLBQ9NRJ5 636 aaKnown RBP8.18□□□□□ -1.1
LIMA1-216ENST00000552909 PANK4Q9NVE7 773 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 KBTBD4Q9NVX7 518 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 CNOT8Q9UFF9 292 aaKnown RBP8.18□□□□□ -1.1
LIMA1-216ENST00000552909 MAPK8IP1Q9UQF2 711 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 NOC2LQ9Y3T9 749 aaKnown RBP8.18□□□□□ -1.1
LIMA1-216ENST00000552909 KDM3AQ9Y4C1 1321 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 MUC3AQ02505 3323 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 GOLGA6L10A0A0M3HER8 536 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 A0A1W2PQJ5 194 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 GRID2IPA4D2P6 1211 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 TRIM49BA6NDI0 452 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 BAIAP3O94812 1187 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 RPN1P04843 607 aaKnown RBP8.18□□□□□ -1.1
LIMA1-216ENST00000552909 PRCPP42785 496 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 KIF11P52732 1056 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 TNNC1P63316 161 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 ROR2Q01974 943 aaKnown RBP8.18□□□□□ -1.1
LIMA1-216ENST00000552909 NFX1Q12986 1120 aaKnown RBP8.18□□□□□ -1.1
LIMA1-216ENST00000552909 IFI16Q16666 785 aaKnown RBP8.18□□□□□ -1.1
LIMA1-216ENST00000552909 TSHZ1Q6ZSZ6 1077 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 CACNA2D4Q7Z3S7 1137 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 KCNK18Q7Z418 384 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 HERC6Q8IVU3 1022 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 MYOCDQ8IZQ8 938 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 TEX9Q8N6V9 391 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 EIF1ADQ8N9N8 165 aaKnown RBP8.18□□□□□ -1.1
LIMA1-216ENST00000552909 OR2W6PQ8NHA6 318 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 ERMNQ8TAM6 284 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 LINC01599Q8WXQ3 324 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 TMEM143Q96AN5 459 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 NOX5Q96PH1 765 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 CUEDC2Q9H467 287 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 DHX33Q9H6R0 707 aaKnown RBP8.18□□□□□ -1.1
LIMA1-216ENST00000552909 BLOC1S4Q9NUP1 217 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 NOVA2Q9UNW9 492 aaKnown RBP8.18□□□□□ -1.1
LIMA1-216ENST00000552909 GDAQ9Y2T3 454 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 NFS1Q9Y697 457 aa8.18□□□□□ -1.1
LIMA1-216ENST00000552909 LCHNA4D1U4 455 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 E9PMD0 336 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 M0QZ92 97 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 MGEA5O60502 916 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 UPP2O95045 317 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 LYPLA2O95372 231 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 LCA5LO95447 670 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 FGFR4P22455 802 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 RPA1P27694 616 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 RARRES1P49788 294 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 KLK7P49862 253 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 GPC3P51654 580 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 TTC3P53804 2025 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 AMPD3Q01432 767 aa8.17□□□□□ -1.1
LIMA1-216ENST00000552909 MTMR3Q13615 1198 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms