RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 ZNF543Q08ER8 600 aa6.02□□□□□ -1.45
LIMA1-205ENST00000550592 ELAVL1Q15717 326 aaKnown RBP6.02□□□□□ -1.45
LIMA1-205ENST00000550592 KRTAP19-4Q3LI73 84 aa6.02□□□□□ -1.45
LIMA1-205ENST00000550592 UTP14CQ5TAP6 766 aaKnown RBP6.02□□□□□ -1.45
LIMA1-205ENST00000550592 SESTD1Q86VW0 696 aa6.02□□□□□ -1.45
LIMA1-205ENST00000550592 SMC5Q8IY18 1101 aa6.02□□□□□ -1.45
LIMA1-205ENST00000550592 ZC3H10Q96K80 434 aaKnown RBP6.02□□□□□ -1.45
LIMA1-205ENST00000550592 SGCZQ96LD1 299 aa6.02□□□□□ -1.45
LIMA1-205ENST00000550592 SSBP3Q9BWW4 388 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-205ENST00000550592 SLAMF7Q9NQ25 335 aa6.02□□□□□ -1.45
LIMA1-205ENST00000550592 DAAM1Q9Y4D1 1078 aa6.02□□□□□ -1.45
LIMA1-205ENST00000550592 DRGXA6NNA5 263 aa6.01□□□□□ -1.45
LIMA1-205ENST00000550592 THP07101 528 aa6.01□□□□□ -1.45
LIMA1-205ENST00000550592 MGAT1P26572 445 aa6.01□□□□□ -1.45
LIMA1-205ENST00000550592 PHKA1P46020 1223 aa6.01□□□□□ -1.45
LIMA1-205ENST00000550592 HABP2Q14520 560 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-205ENST00000550592 POLNQ7Z5Q5 900 aa6.01□□□□□ -1.45
LIMA1-205ENST00000550592 D2HGDHQ8N465 521 aa6.01□□□□□ -1.45
LIMA1-205ENST00000550592 FITM2Q8N6M3 262 aa6.01□□□□□ -1.45
LIMA1-205ENST00000550592 AOPEPQ8N6M6 819 aa6.01□□□□□ -1.45
LIMA1-205ENST00000550592 OR6B3Q8NGW1 331 aa6.01□□□□□ -1.45
LIMA1-205ENST00000550592 MIEF2Q96C03 454 aa6.01□□□□□ -1.45
LIMA1-205ENST00000550592 NMD3Q96D46 503 aaKnown RBP6.01□□□□□ -1.45
LIMA1-205ENST00000550592 CHMP4AQ9BY43 222 aa6.01□□□□□ -1.45
LIMA1-205ENST00000550592 ADAM7Q9H2U9 754 aa6.01□□□□□ -1.45
LIMA1-205ENST00000550592 SPON1Q9HCB6 807 aa6.01□□□□□ -1.45
LIMA1-205ENST00000550592 STK32BQ9NY57 414 aa6.01□□□□□ -1.45
LIMA1-205ENST00000550592 SLC45A2Q9UMX9 530 aa6.01□□□□□ -1.45
LIMA1-205ENST00000550592 CORO2BQ9UQ03 480 aa6.01□□□□□ -1.45
LIMA1-205ENST00000550592 SNX13Q9Y5W8 968 aa6.01□□□□□ -1.45
LIMA1-205ENST00000550592 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.01□□□□□ -1.45
LIMA1-205ENST00000550592 TOPBP1Q92547 1522 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 LOC102724159A0A0B4J2E5 919 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 BTN3A1O00481 513 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 KPNA5O15131 536 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 AGFG2O95081 481 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 ABHD16AO95870 558 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 KCNJ5P48544 419 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 PWP2Q15269 919 aaKnown RBP6□□□□□ -1.45
LIMA1-205ENST00000550592 DCAF17Q5H9S7 520 aaPredicted RBP6□□□□□ -1.45
LIMA1-205ENST00000550592 UBXN11Q5T124 520 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 SPTY2D1Q68D10 685 aaPredicted RBP6□□□□□ -1.45
LIMA1-205ENST00000550592 ZNF783Q6ZMS7 281 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 LIMS2Q7Z4I7 341 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 CIR1Q86X95 450 aaPredicted RBP6□□□□□ -1.45
LIMA1-205ENST00000550592 ANKRD35Q8N283 1001 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 RNF169Q8NCN4 708 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 ACRBPQ8NEB7 543 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 DEPTORQ8TB45 409 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 DDX17Q92841 729 aaKnown RBP6□□□□□ -1.45
LIMA1-205ENST00000550592 SCAMP4Q969E2 229 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 RIPOR3Q96MK2 946 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 ARPC5LQ9BPX5 153 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 ZCCHC4Q9H5U6 513 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 MYH16Q9H6N6 1097 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 SMURF2Q9HAU4 748 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 PARD6AQ9NPB6 346 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 STARD7Q9NQZ5 370 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 POGKQ9P215 609 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 COL20A1Q9P218 1284 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 AFF4Q9UHB7 1163 aaKnown RBP6□□□□□ -1.45
LIMA1-205ENST00000550592 PADI4Q9UM07 663 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 DMTF1Q9Y222 760 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 ABCC8Q09428 1581 aa6□□□□□ -1.45
LIMA1-205ENST00000550592 CDHR4A6H8M9 788 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 TRIM43BA6NCK2 446 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 PATE3B3GLJ2 98 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 PRICKLE3O43900 615 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-205ENST00000550592 TBC1D4O60343 1298 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 DNAJB5O75953 348 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 IL18RAPO95256 599 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 GNAI2P04899 355 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 SETSIPP0DME0 302 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 SLC6A2P23975 617 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 RABGGTBP53611 331 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 PSMC1P62191 440 aaKnown RBP5.99□□□□□ -1.45
LIMA1-205ENST00000550592 BTKQ06187 659 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 TCF15Q12870 199 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 DAG1Q14118 895 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 C10orf62Q5T681 223 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-205ENST00000550592 GORABQ5T7V8 394 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 C1QL3Q5VWW1 255 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 NAIF1Q69YI7 327 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-205ENST00000550592 XRRA1Q6P2D8 792 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 GLB1LQ6UWU2 654 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 Q6ZSN1 163 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 HTR3DQ70Z44 454 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 MED25Q71SY5 747 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 USP37Q86T82 979 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 ZFPM1Q8IX07 1006 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 GSPT2Q8IYD1 628 aaKnown RBP5.99□□□□□ -1.45
LIMA1-205ENST00000550592 OR2C3Q8N628 320 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 OR10H5Q8NGA6 315 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 TBC1D15Q8TC07 691 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 MAML1Q92585 1016 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 TRIM43Q96BQ3 446 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-205ENST00000550592 TEPSINQ96N21 525 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 RBM15Q96T37 977 aaKnown RBP eCLIP5.99□□□□□ -1.45
LIMA1-205ENST00000550592 COLEC11Q9BWP8 271 aa5.99□□□□□ -1.45
LIMA1-205ENST00000550592 PNPLA8Q9NP80 782 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms