RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 PPM1FP49593 454 aaPredicted RBP15.84■□□□□ 0.13
CUX1-214ENST00000550008 CLNS1AP54105 237 aaKnown RBP15.84■□□□□ 0.13
CUX1-214ENST00000550008 BYSLQ13895 437 aaKnown RBP15.84■□□□□ 0.13
CUX1-214ENST00000550008 GJC2Q5T442 439 aaPredicted RBP15.84■□□□□ 0.13
CUX1-214ENST00000550008 CFAP61Q8NHU2 1237 aa15.84■□□□□ 0.13
CUX1-214ENST00000550008 COPS5Q92905 334 aa15.84■□□□□ 0.13
CUX1-214ENST00000550008 MYCBPQ99417 103 aaPredicted RBP15.84■□□□□ 0.13
CUX1-214ENST00000550008 METTL5Q9NRN9 209 aaKnown RBP15.84■□□□□ 0.13
CUX1-214ENST00000550008 A0A087WZ62 844 aa15.84■□□□□ 0.13
CUX1-214ENST00000550008 CCDC195A0A1B0GUA6 201 aa15.84■□□□□ 0.13
CUX1-214ENST00000550008 SLC25A27O95847 323 aa15.84■□□□□ 0.13
CUX1-214ENST00000550008 ERVK-9P63128 1117 aa15.84■□□□□ 0.13
CUX1-214ENST00000550008 RBP5P82980 135 aa15.84■□□□□ 0.13
CUX1-214ENST00000550008 TADA2BQ86TJ2 420 aa15.84■□□□□ 0.13
CUX1-214ENST00000550008 VSIG10LQ86VR7 867 aa15.84■□□□□ 0.13
CUX1-214ENST00000550008 TRPM4Q8TD43 1214 aa15.84■□□□□ 0.13
CUX1-214ENST00000550008 DEPDC1BQ8WUY9 529 aa15.84■□□□□ 0.13
CUX1-214ENST00000550008 FDXACB1Q9BRP7 624 aaPredicted RBP15.84■□□□□ 0.13
CUX1-214ENST00000550008 VAV3Q9UKW4 847 aa15.84■□□□□ 0.13
CUX1-214ENST00000550008 GTPBP10A4D1E9 387 aaKnown RBP15.83■□□□□ 0.13
CUX1-214ENST00000550008 NAMPTP43490 491 aa15.83■□□□□ 0.13
CUX1-214ENST00000550008 ERFP50548 548 aa15.83■□□□□ 0.13
CUX1-214ENST00000550008 CDH8P55286 799 aa15.83■□□□□ 0.13
CUX1-214ENST00000550008 AP1B1Q10567 949 aa15.83■□□□□ 0.13
CUX1-214ENST00000550008 HIF1AQ16665 826 aa15.83■□□□□ 0.13
CUX1-214ENST00000550008 LBHD1Q9BQE6 289 aaPredicted RBP15.83■□□□□ 0.13
CUX1-214ENST00000550008 RAB6BQ9NRW1 208 aa15.83■□□□□ 0.13
CUX1-214ENST00000550008 CLGNO14967 610 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 KIAA0391O15091 583 aaKnown RBP15.83■□□□□ 0.12
CUX1-214ENST00000550008 EIF3HO15372 352 aaKnown RBP eCLIP15.83■□□□□ 0.121e-7■■■□□ 16.5
CUX1-214ENST00000550008 KCNN4O15554 427 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 KITP10721 976 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 RBP3P10745 1247 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 RASSF2P50749 326 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 AP3M2P53677 418 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 SESN2P58004 480 aaPredicted RBP15.83■□□□□ 0.12
CUX1-214ENST00000550008 ROR1Q01973 937 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 DAB2IPQ5VWQ8 1189 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 DLK2Q6UY11 383 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 RNF139Q8WU17 664 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 CHMP6Q96FZ7 201 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 GANQ9H2C0 597 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 FRMD3A2A2Y4 597 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 TCP11X1B4DZS4 312 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 TLR2O60603 784 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 NPTXRO95502 500 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 FKBP1AP62942 108 aaKnown RBP15.83■□□□□ 0.12
CUX1-214ENST00000550008 SPARCL1Q14515 664 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 KDELC2Q7Z4H8 507 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 TGS1Q96RS0 853 aaKnown RBP15.83■□□□□ 0.12
CUX1-214ENST00000550008 RAB21Q9UL25 225 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 NEU2Q9Y3R4 380 aa15.83■□□□□ 0.12
CUX1-214ENST00000550008 IQCA1LA6NCM1 817 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 TXNDC9O14530 226 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 NUMBP49757 651 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 C4orf50Q6ZRC1 276 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 TSEN2Q8NCE0 465 aaKnown RBP15.82■□□□□ 0.12
CUX1-214ENST00000550008 HVCN1Q96D96 273 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 KDM3BQ7LBC6 1761 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 PARP4Q9UKK3 1724 aaKnown RBP15.82■□□□□ 0.12
CUX1-214ENST00000550008 PYGMP11217 842 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 MUTP22033 750 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 GARTP22102 1010 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 JAG1P78504 1218 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 VGLL4Q14135 290 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 EPS8L3Q8TE67 593 aaKnown RBP15.82■□□□□ 0.12
CUX1-214ENST00000550008 OPTNQ96CV9 577 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 TRAIPQ9BWF2 469 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 CISHQ9NSE2 258 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 IRF6O14896 467 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 HUNKP57058 714 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 TMPRSS15P98073 1019 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 HEATR6Q6AI08 1181 aaKnown RBP15.82■□□□□ 0.12
CUX1-214ENST00000550008 SPATA18Q8TC71 538 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 PRMT7Q9NVM4 692 aaPredicted RBP15.82■□□□□ 0.12
CUX1-214ENST00000550008 CHMP2BQ9UQN3 213 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 PIK3CDO00329 1044 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 TRADDQ15628 312 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 FKBP1CQ5VVH2 108 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 BTNL9Q6UXG8 535 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 APTXQ7Z2E3 356 aaKnown RBP15.82■□□□□ 0.12
CUX1-214ENST00000550008 COL20A1Q9P218 1284 aa15.82■□□□□ 0.12
CUX1-214ENST00000550008 COPEO14579 308 aa15.81■□□□□ 0.12
CUX1-214ENST00000550008 GJB1P08034 283 aa15.81■□□□□ 0.12
CUX1-214ENST00000550008 MAP2K2P36507 400 aa15.81■□□□□ 0.12
CUX1-214ENST00000550008 LAMTOR4Q0VGL1 99 aa15.81■□□□□ 0.12
CUX1-214ENST00000550008 TMEM132BQ14DG7 1078 aa15.81■□□□□ 0.12
CUX1-214ENST00000550008 ACOT1Q86TX2 421 aa15.81■□□□□ 0.12
CUX1-214ENST00000550008 NT5DC3Q86UY8 548 aa15.81■□□□□ 0.12
CUX1-214ENST00000550008 CCT6BQ92526 530 aa15.81■□□□□ 0.12
CUX1-214ENST00000550008 KCND1Q9NSA2 647 aa15.81■□□□□ 0.12
CUX1-214ENST00000550008 GPATCH2LQ9NWQ4 482 aa15.81■□□□□ 0.12
CUX1-214ENST00000550008 GIPC1O14908 333 aa15.81■□□□□ 0.12
CUX1-214ENST00000550008 MARCKSL1P49006 195 aa15.81■□□□□ 0.12
CUX1-214ENST00000550008 RRP1BQ14684 758 aaKnown RBP15.81■□□□□ 0.12
CUX1-214ENST00000550008 SNCBQ16143 134 aa15.81■□□□□ 0.12
CUX1-214ENST00000550008 RCOR2Q8IZ40 523 aa15.81■□□□□ 0.12
CUX1-214ENST00000550008 NT5C1AQ9BXI3 368 aa15.81■□□□□ 0.12
CUX1-214ENST00000550008 ASCC2Q9H1I8 757 aaPredicted RBP15.81■□□□□ 0.12
CUX1-214ENST00000550008 ADARB2Q9NS39 739 aaKnown RBP15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms