RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 PNPLA4P41247 253 aa22.8■■□□□ 1.24
VPS29-206ENST00000549578 PLCB3Q01970 1234 aa22.8■■□□□ 1.24
VPS29-206ENST00000549578 MYO1EQ12965 1108 aa22.8■■□□□ 1.24
VPS29-206ENST00000549578 SV2CQ496J9 727 aa22.8■■□□□ 1.24
VPS29-206ENST00000549578 RAB20Q9NX57 234 aa22.8■■□□□ 1.24
VPS29-206ENST00000549578 COQ4Q9Y3A0 265 aa22.8■■□□□ 1.24
VPS29-206ENST00000549578 KPNA7A9QM74 516 aa22.79■■□□□ 1.24
VPS29-206ENST00000549578 TPM2P07951 284 aa22.79■■□□□ 1.24
VPS29-206ENST00000549578 AARSP49588 968 aaKnown RBP eCLIP22.79■■□□□ 1.24
VPS29-206ENST00000549578 KRT17Q04695 432 aa22.79■■□□□ 1.24
VPS29-206ENST00000549578 ZNF699Q32M78 642 aa22.79■■□□□ 1.24
VPS29-206ENST00000549578 HABP4Q5JVS0 413 aaKnown RBP22.79■■□□□ 1.24
VPS29-206ENST00000549578 SPOPLQ6IQ16 392 aa22.79■■□□□ 1.24
VPS29-206ENST00000549578 TAS1R1Q7RTX1 841 aa22.79■■□□□ 1.24
VPS29-206ENST00000549578 B3GALT6Q96L58 329 aa22.79■■□□□ 1.24
VPS29-206ENST00000549578 LRRC10BA6NIK2 292 aa22.78■■□□□ 1.24
VPS29-206ENST00000549578 GRM6O15303 877 aa22.78■■□□□ 1.24
VPS29-206ENST00000549578 PMM2O15305 246 aa22.78■■□□□ 1.24
VPS29-206ENST00000549578 P4HA2O15460 535 aa22.78■■□□□ 1.24
VPS29-206ENST00000549578 CSPG5O95196 566 aa22.78■■□□□ 1.24
VPS29-206ENST00000549578 EFEMP2O95967 443 aa22.78■■□□□ 1.24
VPS29-206ENST00000549578 ASS1P00966 412 aaKnown RBP22.78■■□□□ 1.24
VPS29-206ENST00000549578 ATICP31939 592 aa22.78■■□□□ 1.24
VPS29-206ENST00000549578 GPM6BQ13491 265 aa22.78■■□□□ 1.24
VPS29-206ENST00000549578 DSTYKQ6XUX3 929 aa22.78■■□□□ 1.24
VPS29-206ENST00000549578 DDX53Q86TM3 631 aaKnown RBP22.78■■□□□ 1.24
VPS29-206ENST00000549578 SPPL3Q8TCT6 385 aa22.78■■□□□ 1.24
VPS29-206ENST00000549578 GDPD5Q8WTR4 605 aa22.78■■□□□ 1.24
VPS29-206ENST00000549578 CRACR2AQ9BSW2 395 aa22.78■■□□□ 1.24
VPS29-206ENST00000549578 TTYH1Q9H313 450 aaPredicted RBP22.78■■□□□ 1.24
VPS29-206ENST00000549578 SNX9Q9Y5X1 595 aa22.78■■□□□ 1.24
VPS29-206ENST00000549578 H3BNC9 293 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 RFXAPO00287 272 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 TRAPPC3O43617 180 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 DNAJB1P25685 340 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 CETN1Q12798 172 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 SGSM1Q2NKQ1 1148 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 WDR72Q3MJ13 1102 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 FAM171A1Q5VUB5 890 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 RNF168Q8IYW5 571 aaPredicted RBP22.77■■□□□ 1.24
VPS29-206ENST00000549578 POF1BQ8WVV4 589 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 SUSD3Q96L08 255 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 SENP8Q96LD8 212 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 IMPG2Q9BZV3 1241 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 GCNT4Q9P109 453 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 NXF1Q9UBU9 619 aaKnown RBP22.77■■□□□ 1.24
VPS29-206ENST00000549578 LGALS16A8MUM7 142 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 STAU1O95793 577 aaKnown RBP22.77■■□□□ 1.24
VPS29-206ENST00000549578 SERPINC1P01008 464 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 NOP14P78316 857 aaKnown RBP22.77■■□□□ 1.24
VPS29-206ENST00000549578 FANCCQ00597 558 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 ELAVL2Q12926 359 aaKnown RBP22.77■■□□□ 1.24
VPS29-206ENST00000549578 VPS52Q8N1B4 723 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 VRTNQ9H8Y1 702 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 APOBEC3GQ9HC16 384 aaKnown RBP22.77■■□□□ 1.24
VPS29-206ENST00000549578 PUF60Q9UHX1 559 aaKnown RBP22.77■■□□□ 1.24
VPS29-206ENST00000549578 POLIQ9UNA4 740 aa22.77■■□□□ 1.24
VPS29-206ENST00000549578 VWA8A3KMH1 1905 aa22.76■■□□□ 1.23
VPS29-206ENST00000549578 COL4A4P53420 1690 aaPredicted RBP22.76■■□□□ 1.23
VPS29-206ENST00000549578 TMEM265A0A087WTH1 108 aa22.76■■□□□ 1.23
VPS29-206ENST00000549578 M0QZQ0 153 aa22.76■■□□□ 1.23
VPS29-206ENST00000549578 CYB561D2O14569 222 aa22.76■■□□□ 1.23
VPS29-206ENST00000549578 SOD2P04179 222 aa22.76■■□□□ 1.23
VPS29-206ENST00000549578 TKTP29401 623 aaKnown RBP22.76■■□□□ 1.23
VPS29-206ENST00000549578 ZNF667Q5HYK9 610 aa22.76■■□□□ 1.23
VPS29-206ENST00000549578 CEP57Q86XR8 500 aa22.76■■□□□ 1.23
VPS29-206ENST00000549578 LMO3Q8TAP4 145 aa22.76■■□□□ 1.23
VPS29-206ENST00000549578 TAF4BQ92750 862 aa22.76■■□□□ 1.23
VPS29-206ENST00000549578 HERC2P3Q9BVR0 1158 aa22.76■■□□□ 1.23
VPS29-206ENST00000549578 INTS2Q9H0H0 1204 aaKnown RBP22.76■■□□□ 1.23
VPS29-206ENST00000549578 GDAP2Q9NXN4 497 aa22.76■■□□□ 1.23
VPS29-206ENST00000549578 LZTS1Q9Y250 596 aa22.76■■□□□ 1.23
VPS29-206ENST00000549578 TIMM13Q9Y5L4 95 aaPredicted RBP22.76■■□□□ 1.23
VPS29-206ENST00000549578 MYO9BQ13459 2157 aa22.76■■□□□ 1.23
VPS29-206ENST00000549578 GTPBP10A4D1E9 387 aaKnown RBP22.75■■□□□ 1.23
VPS29-206ENST00000549578 PAX3P23760 479 aa22.75■■□□□ 1.23
VPS29-206ENST00000549578 TNNC1P63316 161 aa22.75■■□□□ 1.23
VPS29-206ENST00000549578 LRMPQ12912 555 aa22.75■■□□□ 1.23
VPS29-206ENST00000549578 RTP2Q5QGT7 225 aa22.75■■□□□ 1.23
VPS29-206ENST00000549578 SCARA5Q6ZMJ2 495 aa22.75■■□□□ 1.23
VPS29-206ENST00000549578 GBP6Q6ZN66 633 aa22.75■■□□□ 1.23
VPS29-206ENST00000549578 CCDC150Q8NCX0 1101 aa22.75■■□□□ 1.23
VPS29-206ENST00000549578 EHBP1Q8NDI1 1231 aa22.75■■□□□ 1.23
VPS29-206ENST00000549578 NAP1L5Q96NT1 182 aaPredicted RBP22.75■■□□□ 1.23
VPS29-206ENST00000549578 PCDHB8Q9UN66 801 aa22.75■■□□□ 1.23
VPS29-206ENST00000549578 TRANK1O15050 2925 aa22.74■■□□□ 1.23
VPS29-206ENST00000549578 ODC1P11926 461 aa22.74■■□□□ 1.23
VPS29-206ENST00000549578 SLC9A1P19634 815 aa22.74■■□□□ 1.23
VPS29-206ENST00000549578 FGFR3P22607 806 aa22.74■■□□□ 1.23
VPS29-206ENST00000549578 UBE3AQ05086 875 aa22.74■■□□□ 1.23
VPS29-206ENST00000549578 CAMK1Q14012 370 aa22.74■■□□□ 1.23
VPS29-206ENST00000549578 EXOC3L4Q17RC7 722 aa22.74■■□□□ 1.23
VPS29-206ENST00000549578 USP41Q3LFD5 358 aa22.74■■□□□ 1.23
VPS29-206ENST00000549578 WDR44Q5JSH3 913 aa22.74■■□□□ 1.23
VPS29-206ENST00000549578 FKBP15Q5T1M5 1219 aa22.74■■□□□ 1.23
VPS29-206ENST00000549578 ZNF697Q5TEC3 545 aa22.74■■□□□ 1.23
VPS29-206ENST00000549578 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.74■■□□□ 1.23
VPS29-206ENST00000549578 TATDN2Q93075 761 aa22.74■■□□□ 1.23
VPS29-206ENST00000549578 FAM161BQ96MY7 647 aa22.74■■□□□ 1.23
VPS29-206ENST00000549578 MMS19Q96T76 1030 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms