RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 PIK3R2O00459 728 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 N4BP3O15049 544 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 ATXN7O15265 892 aaPredicted RBP9.16□□□□□ -0.94
VPS29-203ENST00000546588 P4HA2O15460 535 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 FKTNO75072 461 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 TRPA1O75762 1119 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 ZNF286BP0CG31 522 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 PTGS1P23219 599 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 SFPQP23246 707 aaKnown RBP eCLIP9.16□□□□□ -0.94
VPS29-203ENST00000546588 HNRNPH3P31942 346 aaKnown RBP9.16□□□□□ -0.94
VPS29-203ENST00000546588 GBP2P32456 591 aaPredicted RBP9.16□□□□□ -0.94
VPS29-203ENST00000546588 PSMC2P35998 433 aaKnown RBP9.16□□□□□ -0.94
VPS29-203ENST00000546588 SOX10P56693 466 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 PTENP60484 403 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 DRP2Q13474 957 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 GRIK4Q16099 956 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 FSCN1Q16658 493 aaKnown RBP9.16□□□□□ -0.94
VPS29-203ENST00000546588 VWA3BQ502W6 1294 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 PRAMEF19Q5SWL8 479 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 SAMD5Q5TGI4 173 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 MTHFD1LQ6UB35 978 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 ZNF410Q86VK4 478 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 TMEM139Q8IV31 216 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 TC2NQ8N9U0 490 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 CD99L2Q8TCZ2 262 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 CCDC51Q96ER9 411 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 TRIM56Q9BRZ2 755 aaKnown RBP9.16□□□□□ -0.94
VPS29-203ENST00000546588 EDEM3Q9BZQ6 932 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 KCNF1Q9H3M0 494 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 ZHX3Q9H4I2 956 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 LIN7BQ9HAP6 207 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 IFT122Q9HBG6 1241 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 PTPRHQ9HD43 1115 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 PLCB1Q9NQ66 1216 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 MAGEC2Q9UBF1 373 aaPredicted RBP9.16□□□□□ -0.94
VPS29-203ENST00000546588 ZKSCAN5Q9Y2L8 839 aa9.16□□□□□ -0.94
VPS29-203ENST00000546588 CNTNAP2Q9UHC6 1331 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 DYNC1LI2O43237 492 aaPredicted RBP9.15□□□□□ -0.94
VPS29-203ENST00000546588 GYPCP04921 128 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 EDN1P05305 212 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 SMIM10L2AP0DMW4 78 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 SMIM10L2BP0DMW5 78 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 EPB41P11171 864 aaKnown RBP9.15□□□□□ -0.94
VPS29-203ENST00000546588 HSPA6P17066 643 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 ATF4P18848 351 aaPredicted RBP9.15□□□□□ -0.94
VPS29-203ENST00000546588 MARK3P27448 753 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 CHRNA4P43681 627 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 GJA8P48165 433 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 CCZ1BP86790 482 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 CCZ1P86791 482 aaPredicted RBP9.15□□□□□ -0.94
VPS29-203ENST00000546588 MAP2K1Q02750 393 aaPredicted RBP9.15□□□□□ -0.94
VPS29-203ENST00000546588 MBTD1Q05BQ5 628 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 PTPN11Q06124 597 aaPredicted RBP9.15□□□□□ -0.94
VPS29-203ENST00000546588 LAMTOR4Q0VGL1 99 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 BFSP1Q12934 665 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 PPFIA1Q13136 1202 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 GRM1Q13255 1194 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 TFDP1Q14186 410 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 PEAR1Q5VY43 1037 aaPredicted RBP9.15□□□□□ -0.94
VPS29-203ENST00000546588 SLFN12LQ6IEE8 588 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 ARMCX5Q6P1M9 558 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 INTS8Q75QN2 995 aaKnown RBP9.15□□□□□ -0.94
VPS29-203ENST00000546588 LRRC8AQ8IWT6 810 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 XXYLT1Q8NBI6 393 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 CCDC112Q8NEF3 446 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 LMBR1Q8WVP7 490 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 PRPF31Q8WWY3 499 aaKnown RBP9.15□□□□□ -0.94
VPS29-203ENST00000546588 TMEM143Q96AN5 459 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 MFSD14AQ96MC6 490 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 PANX2Q96RD6 677 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 NOC4LQ9BVI4 516 aaKnown RBP9.15□□□□□ -0.94
VPS29-203ENST00000546588 NUP58Q9BVL2 599 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 SEZ6LQ9BYH1 1024 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 GSX2Q9BZM3 304 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 AP5M1Q9H0R1 490 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 KIAA1586Q9HCI6 787 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 C11orf16Q9NQ32 467 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 TAB2Q9NYJ8 693 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 HSPBP1Q9NZL4 362 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 ARMCX3Q9UH62 379 aaPredicted RBP9.15□□□□□ -0.94
VPS29-203ENST00000546588 KLF15Q9UIH9 416 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 PCDHGC4Q9Y5F7 938 aa9.15□□□□□ -0.94
VPS29-203ENST00000546588 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.15□□□□□ -0.94
VPS29-203ENST00000546588 PCNTO95613 3336 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 A0A0B4J269 797 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 ACKR2O00590 384 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 MFAP3LO75121 409 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 TPM2P07951 284 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 RARBP10826 455 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 NFKB1P19838 968 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 AMPD1P23109 780 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 KLRC1P26715 233 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 TMOD1P28289 359 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 SSR1P43307 286 aaKnown RBP9.14□□□□□ -0.95
VPS29-203ENST00000546588 GPC3P51654 580 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 CDK17Q00537 523 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 MEA1Q16626 185 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 KIAA0753Q2KHM9 967 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 HSP90AA4PQ58FG1 418 aa9.14□□□□□ -0.95
VPS29-203ENST00000546588 EFCAB12Q6NXP0 572 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms