RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-217	ENST00000546164	OXCT2	Q9BYC2	517 aa	Predicted RBP	12.85	□□□□□ -0.35
YBX3-217	ENST00000546164	PCIF1	Q9H4Z3	704 aa		12.85	□□□□□ -0.35
YBX3-217	ENST00000546164	POMK	Q9H5K3	350 aa		12.85	□□□□□ -0.35
YBX3-217	ENST00000546164	DPP3	Q9NY33	737 aa		12.85	□□□□□ -0.35
YBX3-217	ENST00000546164	CDH22	Q9UJ99	828 aa		12.85	□□□□□ -0.35
YBX3-217	ENST00000546164	UST	Q9Y2C2	406 aa		12.85	□□□□□ -0.35
YBX3-217	ENST00000546164	CDY1	Q9Y6F8	540 aa		12.85	□□□□□ -0.35
YBX3-217	ENST00000546164	TRIO	O75962	3097 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	CCDC195	A0A1B0GUA6	201 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	ARHGEF37	A1IGU5	675 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	GOLGA6L4	A6NEF3	574 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	ZNF233	A6NK53	670 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	RFPL2	O75678	378 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	RPN1	P04843	607 aa	Known RBP	12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	HNRNPA1	P09651	372 aa	Known RBP eCLIP	12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	SPATA31D3	P0C874	917 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	TYMP	P19971	482 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	HOXA9	P31269	272 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	ROR1	Q01973	937 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	SNW1	Q13573	536 aa	Known RBP	12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	KCNB1	Q14721	858 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	UVSSA	Q2YD98	709 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	LIN9	Q5TKA1	542 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	SPATA31D4	Q6ZUB0	917 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	CBWD2	Q8IUF1	395 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	NELFCD	Q8IXH7	590 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	XXYLT1	Q8NBI6	393 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	ENGASE	Q8NFI3	743 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	CCDC47	Q96A33	483 aa	Known RBP	12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	PRKD2	Q9BZL6	878 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	FBXL5	Q9UKA1	691 aa		12.84	□□□□□ -0.35
YBX3-217	ENST00000546164	ANK1	P16157	1881 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	PLXNA3	P51805	1871 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	PI4K2B	G5E9Z4	385 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	SPTLC1	O15269	473 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	ABLIM3	O94929	683 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	CYP11A1	P05108	521 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	C8A	P07357	584 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	WEE2	P0C1S8	567 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	PNPLA4	P41247	253 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	TAF6	P49848	677 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	YWHAH	Q04917	246 aa	Predicted RBP	12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	FAM160A1	Q05DH4	1040 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	SNRNP35	Q16560	246 aa	Known RBP	12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	CTXN3	Q4LDR2	81 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	TPGS2	Q68CL5	300 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	DSTYK	Q6XUX3	929 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	CCDC149	Q6ZUS6	474 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	RNF135	Q8IUD6	432 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	SLC9A9	Q8IVB4	645 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	C1orf127	Q8N9H9	656 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	ZNF461	Q8TAF7	563 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	CXorf38	Q8TB03	319 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	FEZF2	Q8TBJ5	459 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	CACTIN	Q8WUQ7	758 aa	Known RBP	12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	KHSRP	Q92945	711 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	BORCS6	Q96GS4	357 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	RPGRIP1	Q96KN7	1286 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	SENP8	Q96LD8	212 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	TIGD1	Q96MW7	591 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	KCTD10	Q9H3F6	313 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	PDE11A	Q9HCR9	933 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	WDR6	Q9NNW5	1121 aa	Known RBP	12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	MAFF	Q9ULX9	164 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	NR2E1	Q9Y466	385 aa		12.83	□□□□□ -0.36
YBX3-217	ENST00000546164	WDR27	A2RRH5	827 aa		12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	OR6C75	A6NL08	312 aa		12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	PDXK	O00764	312 aa		12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	CLIC2	O15247	247 aa		12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	KIF20A	O95235	890 aa		12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	ODC1	P11926	461 aa		12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	ALAD	P13716	330 aa		12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	ATF2	P15336	505 aa		12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	ANP32A	P39687	249 aa	Known RBP	12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	TFAM	Q00059	246 aa	Known RBP	12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	MYBPC2	Q14324	1141 aa		12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	WDR49	Q8IV35	697 aa		12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	LRRC52	Q8N7C0	313 aa		12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	SMG7	Q92540	1137 aa	Known RBP	12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	ZNF560	Q96MR9	790 aa		12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	INTS13	Q9NVM9	706 aa		12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	DMAC2	Q9NW81	257 aa		12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	CHMP5	Q9NZZ3	219 aa		12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	ITGA11	Q9UKX5	1188 aa		12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	DSE	Q9UL01	958 aa		12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	MTCL1	Q9Y4B5	1905 aa	Known RBP	12.82	□□□□□ -0.36
YBX3-217	ENST00000546164	C2CD4D	B7Z1M9	353 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	DCX	O43602	365 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	PRPF40A	O75400	957 aa	Known RBP	12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	TMEM191B	P0C7N4	346 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	POLR2B	P30876	1174 aa	Known RBP	12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	CYP2J2	P51589	502 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	CYP24A1	Q07973	514 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	PSMD6	Q15008	389 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	DUOXA2	Q1HG44	320 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	SV2C	Q496J9	727 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	PPM1L	Q5SGD2	360 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	OTOP3	Q7RTS5	596 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	USP37	Q86T82	979 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	ELOA2	Q8IYF1	753 aa	Predicted RBP	12.81	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms