RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 GGPS1O95749 300 aa15.96■□□□□ 0.14
USP28-214ENST00000545540 DPEP1P16444 411 aa15.96■□□□□ 0.14
USP28-214ENST00000545540 KRT15P19012 456 aa15.96■□□□□ 0.14
USP28-214ENST00000545540 NCALDP61601 193 aa15.96■□□□□ 0.14
USP28-214ENST00000545540 PKN2Q16513 984 aaKnown RBP15.96■□□□□ 0.14
USP28-214ENST00000545540 TRMT10CQ7L0Y3 403 aaKnown RBP15.96■□□□□ 0.14
USP28-214ENST00000545540 ZWILCHQ9H900 591 aa15.96■□□□□ 0.14
USP28-214ENST00000545540 CYP26B1Q9NR63 512 aa15.96■□□□□ 0.14
USP28-214ENST00000545540 PCDHB2Q9Y5E7 798 aa15.96■□□□□ 0.14
USP28-214ENST00000545540 VWA5AO00534 786 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 SKAP2O75563 359 aaPredicted RBP15.95■□□□□ 0.14
USP28-214ENST00000545540 GJB1P08034 283 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 ARSEP51690 589 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 ACTR2P61160 394 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 ALCAMQ13740 583 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 KCTD17Q8N5Z5 321 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 RBBP8NLQ8NC74 664 aaPredicted RBP15.95■□□□□ 0.14
USP28-214ENST00000545540 PLVAPQ9BX97 442 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 CXorf56Q9H5V9 222 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.95■□□□□ 0.14
USP28-214ENST00000545540 CEP83Q9Y592 693 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 GJA3Q9Y6H8 435 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 ATP8B3O60423 1300 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 COL4A5P29400 1685 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 EXOC1LA0A1B0GW35 172 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 PROSCO94903 275 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 MAP3K6O95382 1288 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 MAGEA4P43358 317 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 WDR4P57081 412 aaKnown RBP15.95■□□□□ 0.14
USP28-214ENST00000545540 CNTN2Q02246 1040 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 SPATA21Q7Z572 469 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 ZBED8Q8IZ13 594 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 TTLL6Q8N841 843 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 AGAP11Q8TF27 550 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 IFT74Q96LB3 600 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 IWS1Q96ST2 819 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 TRAIPQ9BWF2 469 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 WHRNQ9P202 907 aa15.95■□□□□ 0.14
USP28-214ENST00000545540 LRRD1A4D1F6 860 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 SRRM3A6NNA2 597 aaPredicted RBP15.94■□□□□ 0.14
USP28-214ENST00000545540 PECAM1P16284 738 aaPredicted RBP15.94■□□□□ 0.14
USP28-214ENST00000545540 YY1P25490 414 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 GTF2H1P32780 548 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 ERFP50548 548 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 OGDHQ02218 1023 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 ZNF449Q6P9G9 518 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 CRELD2Q6UXH1 353 aaPredicted RBP15.94■□□□□ 0.14
USP28-214ENST00000545540 ARMC9Q7Z3E5 817 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 SUPT20HQ8NEM7 779 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 MSTO1Q9BUK6 570 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 MYOZ2Q9NPC6 264 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 SLC12A4Q9UP95 1085 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 ZNFX1Q9P2E3 1918 aaKnown RBP15.94■□□□□ 0.14
USP28-214ENST00000545540 K7ERI5 159 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 ZBED4O75132 1171 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 KRT1P04264 644 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 KRT76Q01546 638 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 MON1BQ7L1V2 547 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 JPH1Q9HDC5 661 aaPredicted RBP15.94■□□□□ 0.14
USP28-214ENST00000545540 NEU2Q9Y3R4 380 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 DOCK5Q9H7D0 1870 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 RBBP6Q7Z6E9 1792 aaKnown RBP15.94■□□□□ 0.14
USP28-214ENST00000545540 SRGAP2CP0DJJ0 459 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 JAK3P52333 1124 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 PLCB4Q15147 1175 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 DCUN1D2Q6PH85 259 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 VSIG10LQ86VR7 867 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 MYCBPQ99417 103 aaPredicted RBP15.94■□□□□ 0.14
USP28-214ENST00000545540 PITPNM3Q9BZ71 974 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 NSRP1Q9H0G5 558 aaKnown RBP15.94■□□□□ 0.14
USP28-214ENST00000545540 NKIRAS1Q9NYS0 192 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 GRID1Q9ULK0 1009 aa15.94■□□□□ 0.14
USP28-214ENST00000545540 SGK1O00141 431 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 WDR46O15213 610 aaKnown RBP15.93■□□□□ 0.14
USP28-214ENST00000545540 ATP4AP20648 1035 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 NOMO3P69849 1222 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 NFX1Q12986 1120 aaKnown RBP15.93■□□□□ 0.14
USP28-214ENST00000545540 CUL2Q13617 745 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 PTK6Q13882 451 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 TNFAIP8L3Q5GJ75 292 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 EMC1Q8N766 993 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 C3orf20Q8ND61 904 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 PCSK1NQ9UHG2 260 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 MGRN1O60291 552 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 SUN1O94901 812 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 STBD1O95210 358 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 ITGBL1O95965 494 aaPredicted RBP15.93■□□□□ 0.14
USP28-214ENST00000545540 C4BPAP04003 597 aaKnown RBP15.93■□□□□ 0.14
USP28-214ENST00000545540 OVGP1Q12889 678 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 NIM1KQ8IY84 436 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 SERPINB12Q96P63 405 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 STMN4Q9H169 189 aaPredicted RBP15.93■□□□□ 0.14
USP28-214ENST00000545540 NXF1Q9UBU9 619 aaKnown RBP15.93■□□□□ 0.14
USP28-214ENST00000545540 BRCA2P51587 3418 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 DNAJC8O75937 253 aaPredicted RBP15.93■□□□□ 0.14
USP28-214ENST00000545540 KCNA2P16389 499 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 ACO1P21399 889 aaKnown RBP15.93■□□□□ 0.14
USP28-214ENST00000545540 TARSP26639 723 aaKnown RBP15.93■□□□□ 0.14
USP28-214ENST00000545540 SSTR1P30872 391 aa15.93■□□□□ 0.14
USP28-214ENST00000545540 RPA3P35244 121 aaPredicted RBP15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms