RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 GOLPH3LQ9H4A5 285 aa15.38■□□□□ 0.05
USP28-209ENST00000540925 CLUHO75153 1309 aa15.38■□□□□ 0.05
USP28-209ENST00000540925 WDFY4Q6ZS81 3184 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 ARHGEF37A1IGU5 675 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 H7C4K7 107 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 C8AP07357 584 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 TYMPP19971 482 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 SP100P23497 879 aaPredicted RBP15.37■□□□□ 0.05
USP28-209ENST00000540925 SNRPFP62306 86 aaKnown RBP15.37■□□□□ 0.05
USP28-209ENST00000540925 NUCB2P80303 420 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 PTPN21Q16825 1174 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 ZNF280DQ6N043 979 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 ARMCX5Q6P1M9 558 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 CCDC149Q6ZUS6 474 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 C12orf56Q8IXR9 622 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 GPD1LQ8N335 351 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 TDRD5Q8NAT2 981 aaKnown RBP15.37■□□□□ 0.05
USP28-209ENST00000540925 KIAA0895Q8NCT3 520 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 TMEM174Q8WUU8 243 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 EDAQ92838 391 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 PCIF1Q9H4Z3 704 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 GDPD2Q9HCC8 539 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 TSHZ2Q9NRE2 1034 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 AGPAT3Q9NRZ7 376 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 DPP3Q9NY33 737 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 RBAKQ9NYW8 714 aaPredicted RBP15.37■□□□□ 0.05
USP28-209ENST00000540925 DOCK8Q8NF50 2099 aa15.37■□□□□ 0.05
USP28-209ENST00000540925 DOCK6Q96HP0 2047 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 NOTCH4Q99466 2003 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 GOLGA8IPA6NC78 632 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 FAM86C2PA6NEL3 165 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 SPDYE4A6NLX3 237 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 GOLGA8JA6NMD2 632 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 VNN2O95498 520 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 CYP11A1P05108 521 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 ATF2P15336 505 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 SYKP43405 635 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 ZXDAP98168 799 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 STK4Q13043 487 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 TMEM31Q5JXX7 168 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 TPGS2Q68CL5 300 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 SCARA3Q6AZY7 606 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 CBWD2Q8IUF1 395 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 TCEAL8Q8IYN2 117 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 PLCD3Q8N3E9 789 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 C1orf127Q8N9H9 656 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 SLC7A14Q8TBB6 771 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 SENP8Q96LD8 212 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 OXCT2Q9BYC2 517 aaPredicted RBP15.36■□□□□ 0.05
USP28-209ENST00000540925 SLC39A2Q9NP94 309 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 HSPBP1Q9NZL4 362 aa15.36■□□□□ 0.05
USP28-209ENST00000540925 TIMM13Q9Y5L4 95 aaPredicted RBP15.36■□□□□ 0.05
USP28-209ENST00000540925 PRR33A8MZF0 331 aa15.35■□□□□ 0.05
USP28-209ENST00000540925 SEC24AO95486 1093 aa15.35■□□□□ 0.05
USP28-209ENST00000540925 YWHAHQ04917 246 aaPredicted RBP15.35■□□□□ 0.05
USP28-209ENST00000540925 DPYDQ12882 1025 aa15.35■□□□□ 0.05
USP28-209ENST00000540925 PSMD2Q13200 908 aa15.35■□□□□ 0.05
USP28-209ENST00000540925 KMT5BQ4FZB7 885 aa15.35■□□□□ 0.05
USP28-209ENST00000540925 CTXN3Q4LDR2 81 aa15.35■□□□□ 0.05
USP28-209ENST00000540925 PPM1LQ5SGD2 360 aa15.35■□□□□ 0.05
USP28-209ENST00000540925 LIN9Q5TKA1 542 aa15.35■□□□□ 0.05
USP28-209ENST00000540925 OTOP3Q7RTS5 596 aa15.35■□□□□ 0.05
USP28-209ENST00000540925 FSIP1Q8NA03 581 aa15.35■□□□□ 0.05
USP28-209ENST00000540925 FAM84AQ96KN4 292 aa15.35■□□□□ 0.05
USP28-209ENST00000540925 GZF1Q9H116 711 aaPredicted RBP15.35■□□□□ 0.05
USP28-209ENST00000540925 PDE11AQ9HCR9 933 aa15.35■□□□□ 0.05
USP28-209ENST00000540925 CGNQ9P2M7 1197 aaKnown RBP15.35■□□□□ 0.05
USP28-209ENST00000540925 EPS15L1Q9UBC2 864 aa15.35■□□□□ 0.05
USP28-209ENST00000540925 SIX4Q9UIU6 781 aa15.35■□□□□ 0.05
USP28-209ENST00000540925 MAFFQ9ULX9 164 aa15.35■□□□□ 0.05
USP28-209ENST00000540925 PTPRJQ12913 1337 aa15.35■□□□□ 0.05
USP28-209ENST00000540925 MYO10Q9HD67 2058 aa15.34■□□□□ 0.05
USP28-209ENST00000540925 PRR29P0C7W0 189 aa15.34■□□□□ 0.05
USP28-209ENST00000540925 KNOP1Q1ED39 458 aaKnown RBP15.34■□□□□ 0.05
USP28-209ENST00000540925 KRBA2Q6ZNG9 492 aa15.34■□□□□ 0.05
USP28-209ENST00000540925 NELFCDQ8IXH7 590 aa15.34■□□□□ 0.05
USP28-209ENST00000540925 ACSF2Q96CM8 615 aaPredicted RBP15.34■□□□□ 0.05
USP28-209ENST00000540925 MYADMQ96S97 322 aa15.34■□□□□ 0.05
USP28-209ENST00000540925 RTP3Q9BQQ7 232 aa15.34■□□□□ 0.05
USP28-209ENST00000540925 KCTD10Q9H3F6 313 aa15.34■□□□□ 0.05
USP28-209ENST00000540925 KIAA1586Q9HCI6 787 aa15.34■□□□□ 0.05
USP28-209ENST00000540925 LIMD1Q9UGP4 676 aa15.34■□□□□ 0.05
USP28-209ENST00000540925 AFF4Q9UHB7 1163 aaKnown RBP15.34■□□□□ 0.05
USP28-209ENST00000540925 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.33■□□□□ 0.04
USP28-209ENST00000540925 ZNF233A6NK53 670 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 OR6C75A6NL08 312 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 CCL16O15467 120 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 RHOBTB3O94955 611 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 ZNF202O95125 648 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 RPN1P04843 607 aaKnown RBP15.33■□□□□ 0.04
USP28-209ENST00000540925 ODC1P11926 461 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 TAF6P49848 677 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 TFAMQ00059 246 aaKnown RBP15.33■□□□□ 0.04
USP28-209ENST00000540925 GPR17Q13304 367 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 MYBPC2Q14324 1141 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 SNRNP35Q16560 246 aaKnown RBP15.33■□□□□ 0.04
USP28-209ENST00000540925 OVOS1Q6IE37 1185 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 DSTYKQ6XUX3 929 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 RNF19BQ6ZMZ0 732 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 TRIM67Q6ZTA4 783 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms