RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 MTMR3Q13615 1198 aa17.97■□□□□ 0.47
USP28-208ENST00000540438 DHX34Q14147 1143 aaKnown RBP17.97■□□□□ 0.47
USP28-208ENST00000540438 FASTKD3Q14CZ7 662 aaKnown RBP17.97■□□□□ 0.47
USP28-208ENST00000540438 TAF5Q15542 800 aa17.97■□□□□ 0.47
USP28-208ENST00000540438 MFSD7Q6UXD7 560 aa17.97■□□□□ 0.47
USP28-208ENST00000540438 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.97■□□□□ 0.47
USP28-208ENST00000540438 DDX27Q96GQ7 796 aaKnown RBP17.97■□□□□ 0.47
USP28-208ENST00000540438 CXCL16Q9H2A7 254 aa17.97■□□□□ 0.47
USP28-208ENST00000540438 ZNF112Q9UJU3 913 aa17.97■□□□□ 0.47
USP28-208ENST00000540438 PASKQ96RG2 1323 aa17.97■□□□□ 0.47
USP28-208ENST00000540438 RASGRF2O14827 1237 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 CLTAP09496 248 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 USP37Q86T82 979 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 TADA2BQ86TJ2 420 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 SEC14L1Q92503 715 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 SPATA33Q96N06 139 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 JPH2Q9BR39 696 aaPredicted RBP17.96■□□□□ 0.47
USP28-208ENST00000540438 RNPEPQ9H4A4 650 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 EFCC1Q9HA90 598 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 DNPEPQ9ULA0 475 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 ZNF148Q9UQR1 794 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 LRRD1A4D1F6 860 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 CETPP11597 493 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 GHRHRQ02643 423 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 GCNT1Q02742 428 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 TRPC3Q13507 836 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 WDR72Q3MJ13 1102 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 C15orf39Q6ZRI6 1047 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 MON1BQ7L1V2 547 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 ELAC2Q9BQ52 826 aaKnown RBP17.96■□□□□ 0.47
USP28-208ENST00000540438 CISHQ9NSE2 258 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 UVRAGQ9P2Y5 699 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 CSADQ9Y600 493 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 CNTNAP2Q9UHC6 1331 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 MCM3APO60318 1980 aa17.96■□□□□ 0.47
USP28-208ENST00000540438 KAT6AQ92794 2004 aa17.96■□□□□ 0.46
USP28-208ENST00000540438 C19orf81C9J6K1 198 aa17.96■□□□□ 0.46
USP28-208ENST00000540438 VTNP04004 478 aa17.96■□□□□ 0.46
USP28-208ENST00000540438 MAGEA9P43362 315 aa17.96■□□□□ 0.46
USP28-208ENST00000540438 SMAD1Q15797 465 aaKnown RBP17.96■□□□□ 0.46
USP28-208ENST00000540438 ABRAQ8N0Z2 381 aa17.96■□□□□ 0.46
USP28-208ENST00000540438 CABS1Q96KC9 395 aa17.96■□□□□ 0.46
USP28-208ENST00000540438 TMEM121Q9BTD3 319 aa17.96■□□□□ 0.46
USP28-208ENST00000540438 TXLNGYQ9BZA5 131 aa17.96■□□□□ 0.46
USP28-208ENST00000540438 OSBPL8Q9BZF1 889 aa17.96■□□□□ 0.46
USP28-208ENST00000540438 ASCC2Q9H1I8 757 aaPredicted RBP17.96■□□□□ 0.46
USP28-208ENST00000540438 ADAMTS5Q9UNA0 930 aa17.96■□□□□ 0.46
USP28-208ENST00000540438 FAM187AA6NFU0 413 aa17.95■□□□□ 0.46
USP28-208ENST00000540438 ARL2P36404 184 aa17.95■□□□□ 0.46
USP28-208ENST00000540438 LRIG3Q6UXM1 1119 aa17.95■□□□□ 0.46
USP28-208ENST00000540438 EFCAB13Q8IY85 973 aa17.95■□□□□ 0.46
USP28-208ENST00000540438 DYDC1Q8WWB3 177 aa17.95■□□□□ 0.46
USP28-208ENST00000540438 PCYOX1Q9UHG3 505 aa17.95■□□□□ 0.46
USP28-208ENST00000540438 ANAPC5Q9UJX4 755 aa17.95■□□□□ 0.46
USP28-208ENST00000540438 SSC5DA1L4H1 1573 aa17.95■□□□□ 0.46
USP28-208ENST00000540438 BHMG1C9JSJ3 638 aaPredicted RBP17.95■□□□□ 0.46
USP28-208ENST00000540438 KRT1P04264 644 aa17.95■□□□□ 0.46
USP28-208ENST00000540438 PRKCBP05771 671 aa17.95■□□□□ 0.46
USP28-208ENST00000540438 P3H1Q32P28 736 aa17.95■□□□□ 0.46
USP28-208ENST00000540438 TTC31Q49AM3 519 aaPredicted RBP17.95■□□□□ 0.46
USP28-208ENST00000540438 LBX2Q6XYB7 198 aa17.95■□□□□ 0.46
USP28-208ENST00000540438 ANKMY2Q8IV38 441 aa17.95■□□□□ 0.46
USP28-208ENST00000540438 LRRC34Q8IZ02 419 aa17.95■□□□□ 0.46
USP28-208ENST00000540438 UBA3Q8TBC4 463 aa17.95■□□□□ 0.46
USP28-208ENST00000540438 LPIN3Q9BQK8 851 aa17.95■□□□□ 0.46
USP28-208ENST00000540438 KIF9Q9HAQ2 790 aa17.95■□□□□ 0.46
USP28-208ENST00000540438 MKI67P46013 3256 aaKnown RBP17.95■□□□□ 0.46
USP28-208ENST00000540438 POC1B-GALNT4F8VUJ3 575 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 SPAG7O75391 227 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 ZNF286BP0CG31 522 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 FDX1P10109 184 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 ZNF568Q3ZCX4 644 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 EAPPQ56P03 285 aaPredicted RBP17.94■□□□□ 0.46
USP28-208ENST00000540438 ZNF365Q70YC5 407 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 APOBEC3FQ8IUX4 373 aaKnown RBP17.94■□□□□ 0.46
USP28-208ENST00000540438 NETO2Q8NC67 525 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 IPO4Q8TEX9 1081 aaKnown RBP17.94■□□□□ 0.46
USP28-208ENST00000540438 CDHR1Q96JP9 859 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 IMPG2Q9BZV3 1241 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 DCLK3Q9C098 648 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 ADAM7Q9H2U9 754 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 EVPLQ92817 2033 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 KIF13BQ9NQT8 1826 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 MAFGO15525 162 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 ADCY3O60266 1144 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 FAM107AO95990 144 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 CD48P09326 243 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 NAMPTP43490 491 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 ZNF252P-AS1Q0IIN9 211 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 AUHQ13825 339 aaKnown RBP17.94■□□□□ 0.46
USP28-208ENST00000540438 CDO1Q16878 200 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 SH3PXD2AQ5TCZ1 1133 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 DENND1BQ6P3S1 775 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 SRRM1Q8IYB3 904 aaKnown RBP17.94■□□□□ 0.46
USP28-208ENST00000540438 JOSD2Q8TAC2 188 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 SLC16A10Q8TF71 515 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 TIPINQ9BVW5 301 aa17.94■□□□□ 0.46
USP28-208ENST00000540438 MAP3K20Q9NYL2 800 aaKnown RBP17.94■□□□□ 0.46
USP28-208ENST00000540438 GOLGA6L7A0A1B0GV03 622 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 TRAPPC3O43617 180 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms