RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 TCEA3O75764 348 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 SMNDC1O75940 238 aaKnown RBP eCLIP21.51■■□□□ 1.03
TMEM260-203ENST00000539559 MYBL1P10243 752 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 PSMC4P43686 418 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 CAPRIN2Q6IMN6 1127 aaKnown RBP21.51■■□□□ 1.03
TMEM260-203ENST00000539559 TRABD2AQ86V40 505 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 TAB3Q8N5C8 712 aaPredicted RBP21.51■■□□□ 1.03
TMEM260-203ENST00000539559 FAM13CQ8NE31 585 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 FAM151AQ8WW52 585 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 CCDC77Q9BR77 488 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 OSBPL8Q9BZF1 889 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 TRABDQ9H4I3 376 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 UMODL1Q5DID0 1318 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 MYPNQ86TC9 1320 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 GOLGA8SH3BPF8 625 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 GOLGA8MH3BSY2 632 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 GPC3P51654 580 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 STAT4Q14765 748 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 SETDB1Q15047 1291 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 SLC39A4Q6P5W5 647 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 LONP2Q86WA8 852 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 CDAN1Q8IWY9 1227 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 AGBL3Q8NEM8 1001 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 TBX20Q9UMR3 447 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 MRPL11Q9Y3B7 192 aaKnown RBP21.51■■□□□ 1.03
TMEM260-203ENST00000539559 NUMBLQ9Y6R0 609 aa21.51■■□□□ 1.03
TMEM260-203ENST00000539559 DENND3A2RUS2 1198 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 PEX11AO75192 247 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 T-ENOLP0DO92 83 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 MUTP22033 750 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 QARSP47897 775 aaKnown RBP21.5■■□□□ 1.03
TMEM260-203ENST00000539559 RAD23BP54727 409 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 XKR9Q5GH70 373 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 VPS37BQ9H9H4 285 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 BATF3Q9NR55 127 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 TXLNGQ9NUQ3 528 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 ENTPD5O75356 428 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 DSG3P32926 999 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 ACVR2BQ13705 512 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 SPDYE2Q495Y8 402 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 DALRD3Q5D0E6 543 aaKnown RBP21.5■■□□□ 1.03
TMEM260-203ENST00000539559 FAM182AQ5T1J6 154 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 CCDC89Q8N998 374 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 SPIRE2Q8WWL2 714 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 BSNDQ8WZ55 320 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 RIT2Q99578 217 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 TBC1D10AQ9BXI6 508 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 DNPEPQ9ULA0 475 aa21.5■■□□□ 1.03
TMEM260-203ENST00000539559 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.5■■□□□ 1.03
TMEM260-203ENST00000539559 ENO4A6NNW6 628 aa21.49■■□□□ 1.03
TMEM260-203ENST00000539559 ATF7P17544 494 aaPredicted RBP21.49■■□□□ 1.03
TMEM260-203ENST00000539559 CA4P22748 312 aa21.49■■□□□ 1.03
TMEM260-203ENST00000539559 NOP14P78316 857 aaKnown RBP21.49■■□□□ 1.03
TMEM260-203ENST00000539559 CAV1Q03135 178 aa21.49■■□□□ 1.03
TMEM260-203ENST00000539559 SYDE1Q6ZW31 735 aaPredicted RBP21.49■■□□□ 1.03
TMEM260-203ENST00000539559 SLC7A6OSQ96CW6 309 aaPredicted RBP21.49■■□□□ 1.03
TMEM260-203ENST00000539559 NAF1Q96HR8 494 aaKnown RBP21.49■■□□□ 1.03
TMEM260-203ENST00000539559 FAM213AQ9BRX8 229 aa21.49■■□□□ 1.03
TMEM260-203ENST00000539559 YIPF3Q9GZM5 350 aa21.49■■□□□ 1.03
TMEM260-203ENST00000539559 RANBP17Q9H2T7 1088 aaKnown RBP21.49■■□□□ 1.03
TMEM260-203ENST00000539559 ASTN2O75129 1339 aaPredicted RBP21.49■■□□□ 1.03
TMEM260-203ENST00000539559 PDHA1P08559 390 aa21.49■■□□□ 1.03
TMEM260-203ENST00000539559 KLRC2P26717 231 aa21.49■■□□□ 1.03
TMEM260-203ENST00000539559 NSFP46459 744 aaKnown RBP21.49■■□□□ 1.03
TMEM260-203ENST00000539559 NPTX2P47972 431 aa21.49■■□□□ 1.03
TMEM260-203ENST00000539559 MOGSQ13724 837 aa21.49■■□□□ 1.03
TMEM260-203ENST00000539559 CCDC125Q86Z20 511 aa21.49■■□□□ 1.03
TMEM260-203ENST00000539559 ANKMY2Q8IV38 441 aa21.49■■□□□ 1.03
TMEM260-203ENST00000539559 TMEM161BQ8NDZ6 487 aa21.49■■□□□ 1.03
TMEM260-203ENST00000539559 RAB3IPQ96QF0 476 aaPredicted RBP21.49■■□□□ 1.03
TMEM260-203ENST00000539559 C10orf88Q9H8K7 445 aa21.49■■□□□ 1.03
TMEM260-203ENST00000539559 EHMT1Q9H9B1 1298 aa21.49■■□□□ 1.03
TMEM260-203ENST00000539559 EME2A4GXA9 379 aaPredicted RBP21.48■■□□□ 1.03
TMEM260-203ENST00000539559 PECAM1P16284 738 aaPredicted RBP21.48■■□□□ 1.03
TMEM260-203ENST00000539559 WNT7BP56706 349 aa21.48■■□□□ 1.03
TMEM260-203ENST00000539559 GAD2Q05329 585 aa21.48■■□□□ 1.03
TMEM260-203ENST00000539559 EFTUD2Q15029 972 aaKnown RBP eCLIP21.48■■□□□ 1.03
TMEM260-203ENST00000539559 CPXCR1Q8N123 301 aa21.48■■□□□ 1.03
TMEM260-203ENST00000539559 DENND1AQ8TEH3 1009 aa21.48■■□□□ 1.03
TMEM260-203ENST00000539559 LRMDAQ9H2I8 198 aa21.48■■□□□ 1.03
TMEM260-203ENST00000539559 ATP9AO75110 1047 aa21.48■■□□□ 1.03
TMEM260-203ENST00000539559 MAN1A1P33908 653 aa21.48■■□□□ 1.03
TMEM260-203ENST00000539559 OVGP1Q12889 678 aa21.48■■□□□ 1.03
TMEM260-203ENST00000539559 CCNG2Q16589 344 aa21.48■■□□□ 1.03
TMEM260-203ENST00000539559 MTMR14Q8NCE2 650 aa21.48■■□□□ 1.03
TMEM260-203ENST00000539559 ZNF516Q92618 1163 aa21.48■■□□□ 1.03
TMEM260-203ENST00000539559 NUDCD1Q96RS6 583 aa21.48■■□□□ 1.03
TMEM260-203ENST00000539559 OSBPL1AQ9BXW6 950 aa21.48■■□□□ 1.03
TMEM260-203ENST00000539559 RNPEPL1Q9HAU8 725 aa21.48■■□□□ 1.03
TMEM260-203ENST00000539559 ALG13Q9NP73 1137 aaKnown RBP21.48■■□□□ 1.03
TMEM260-203ENST00000539559 ZNF148Q9UQR1 794 aa21.48■■□□□ 1.03
TMEM260-203ENST00000539559 COQ4Q9Y3A0 265 aa21.48■■□□□ 1.03
TMEM260-203ENST00000539559 USH1CQ9Y6N9 552 aa21.48■■□□□ 1.03
TMEM260-203ENST00000539559 PROSCO94903 275 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 GNAZP19086 355 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 EIF2AK2P19525 551 aaKnown RBP21.47■■□□□ 1.03
TMEM260-203ENST00000539559 CXCL9Q07325 125 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 ALCAMQ13740 583 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 TAF1BQ53T94 588 aaPredicted RBP21.47■■□□□ 1.03
TMEM260-203ENST00000539559 FKBP1CQ5VVH2 108 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms