RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 TWF1Q12792 350 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 STRN3Q13033 797 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 ZBTB6Q15916 424 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 DTHD1Q6ZMT9 781 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 RNF19BQ6ZMZ0 732 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 MFSD6LQ8IWD5 586 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 HS6ST3Q8IZP7 471 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 GPR88Q9GZN0 384 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 PLEKHA5Q9HAU0 1116 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 ASAH2Q9NR71 780 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.81□□□□□ -0.04
SS18-204ENST00000539244 KCND2Q9NZV8 630 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 ANKFY1Q9P2R3 1169 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 TUBGCP4Q9UGJ1 667 aa14.81□□□□□ -0.04
SS18-204ENST00000539244 TTC26A0AVF1 554 aa14.8□□□□□ -0.04
SS18-204ENST00000539244 SFI1A8K8P3 1242 aa14.8□□□□□ -0.04
SS18-204ENST00000539244 PRR5-ARHGAP8B1AHC4 643 aa14.8□□□□□ -0.04
SS18-204ENST00000539244 VNN2O95498 520 aa14.8□□□□□ -0.04
SS18-204ENST00000539244 HARSP12081 509 aaKnown RBP14.8□□□□□ -0.04
SS18-204ENST00000539244 CPB1P15086 417 aa14.8□□□□□ -0.04
SS18-204ENST00000539244 CYP3A5P20815 502 aa14.8□□□□□ -0.04
SS18-204ENST00000539244 GDI1P31150 447 aa14.8□□□□□ -0.04
SS18-204ENST00000539244 SMTNP53814 917 aa14.8□□□□□ -0.04
SS18-204ENST00000539244 ARHGAP8P85298 464 aa14.8□□□□□ -0.04
SS18-204ENST00000539244 YWHAHQ04917 246 aaPredicted RBP14.8□□□□□ -0.04
SS18-204ENST00000539244 PPP2R5DQ14738 602 aa14.8□□□□□ -0.04
SS18-204ENST00000539244 SYT2Q8N9I0 419 aaPredicted RBP14.8□□□□□ -0.04
SS18-204ENST00000539244 ZSCAN18Q8TBC5 510 aaPredicted RBP14.8□□□□□ -0.04
SS18-204ENST00000539244 FAM3CQ92520 227 aa14.8□□□□□ -0.04
SS18-204ENST00000539244 E2F7Q96AV8 911 aa14.8□□□□□ -0.04
SS18-204ENST00000539244 MSANTD3Q96H12 275 aa14.8□□□□□ -0.04
SS18-204ENST00000539244 LRRC3Q9BY71 257 aa14.8□□□□□ -0.04
SS18-204ENST00000539244 NDRG2Q9UN36 371 aaKnown RBP14.8□□□□□ -0.04
SS18-204ENST00000539244 YIPF1Q9Y548 306 aa14.8□□□□□ -0.04
SS18-204ENST00000539244 PIAS3Q9Y6X2 628 aa14.8□□□□□ -0.04
SS18-204ENST00000539244 NCANO14594 1321 aa14.8□□□□□ -0.04
SS18-204ENST00000539244 ZNF263O14978 683 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 CLDN3O15551 220 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 NEFLP07196 543 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 CLTAP09496 248 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 CXCL8P10145 99 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 MYL4P12829 197 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 MARCKSP29966 332 aaPredicted RBP14.79□□□□□ -0.04
SS18-204ENST00000539244 VIPR2P41587 438 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 CCR3P51677 355 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 SLC12A3P55017 1021 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 LMNB2Q03252 620 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 PLD1Q13393 1074 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 TEAD2Q15562 447 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 SEZ6Q53EL9 994 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 C1orf228Q6PIY5 440 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 TMC8Q8IU68 726 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 SHKBP1Q8TBC3 707 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 TSPAN18Q96SJ8 248 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 HAPLN2Q9GZV7 340 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 DNAJC25Q9H1X3 360 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 LMAN1LQ9HAT1 526 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 PPP4R2Q9NY27 417 aa14.79□□□□□ -0.04
SS18-204ENST00000539244 UBQLN1Q9UMX0 589 aaKnown RBP14.79□□□□□ -0.04
SS18-204ENST00000539244 OR6C75A6NL08 312 aa14.78□□□□□ -0.04
SS18-204ENST00000539244 HEPACAM2A8MVW5 462 aa14.78□□□□□ -0.04
SS18-204ENST00000539244 H0YCG3 227 aa14.78□□□□□ -0.04
SS18-204ENST00000539244 CHADO15335 359 aa14.78□□□□□ -0.04
SS18-204ENST00000539244 ADRB2P07550 413 aa14.78□□□□□ -0.04
SS18-204ENST00000539244 CHRNB1P11230 501 aa14.78□□□□□ -0.04
SS18-204ENST00000539244 GJA1P17302 382 aa14.78□□□□□ -0.04
SS18-204ENST00000539244 ATXN1P54253 815 aaKnown RBP14.78□□□□□ -0.04
SS18-204ENST00000539244 NCKAP1LP55160 1127 aa14.78□□□□□ -0.04
SS18-204ENST00000539244 ATP2C1P98194 919 aaPredicted RBP14.78□□□□□ -0.04
SS18-204ENST00000539244 FCHO2Q0JRZ9 810 aa14.78□□□□□ -0.04
SS18-204ENST00000539244 GPR17Q13304 367 aa14.78□□□□□ -0.04
SS18-204ENST00000539244 CELF5Q8N6W0 485 aaKnown RBP14.78□□□□□ -0.04
SS18-204ENST00000539244 PNMA5Q96PV4 448 aa14.78□□□□□ -0.04
SS18-204ENST00000539244 CRISPLD1Q9H336 500 aa14.78□□□□□ -0.04
SS18-204ENST00000539244 GMEB2Q9UKD1 530 aa14.78□□□□□ -0.04
SS18-204ENST00000539244 FAM189A1O60320 539 aa14.77□□□□□ -0.05
SS18-204ENST00000539244 PAPSS2O95340 614 aaPredicted RBP14.77□□□□□ -0.05
SS18-204ENST00000539244 TYMPP19971 482 aa14.77□□□□□ -0.05
SS18-204ENST00000539244 SCP2P22307 547 aa14.77□□□□□ -0.05
SS18-204ENST00000539244 RAD51AP2Q09MP3 1159 aa14.77□□□□□ -0.05
SS18-204ENST00000539244 MYBPC2Q14324 1141 aa14.77□□□□□ -0.05
SS18-204ENST00000539244 KYAT1Q16773 422 aa14.77□□□□□ -0.05
SS18-204ENST00000539244 RILPL1Q5EBL4 403 aa14.77□□□□□ -0.05
SS18-204ENST00000539244 PIAS4Q8N2W9 510 aaPredicted RBP14.77□□□□□ -0.05
SS18-204ENST00000539244 TMEM130Q8N3G9 435 aa14.77□□□□□ -0.05
SS18-204ENST00000539244 RSPRY1Q96DX4 576 aa14.77□□□□□ -0.05
SS18-204ENST00000539244 KIF12Q96FN5 646 aa14.77□□□□□ -0.05
SS18-204ENST00000539244 KIF2CQ99661 725 aa14.77□□□□□ -0.05
SS18-204ENST00000539244 LARSQ9P2J5 1176 aaKnown RBP14.77□□□□□ -0.05
SS18-204ENST00000539244 HSFX1Q9UBD0 423 aa14.77□□□□□ -0.05
SS18-204ENST00000539244 NUP210Q8TEM1 1887 aaPredicted RBP14.77□□□□□ -0.05
SS18-204ENST00000539244 SPTBN2O15020 2390 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 A0A1W2PRU2 124 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 XPOTO43592 962 aaKnown RBP14.76□□□□□ -0.05
SS18-204ENST00000539244 LRP3O75074 770 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 PIGRP01833 764 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 OR4Q2P0C623 313 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 PLA2G4BP0C869 781 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 PAX3P23760 479 aa14.76□□□□□ -0.05
SS18-204ENST00000539244 CCNE1P24864 410 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms