RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 OGFRQ9NZT2 677 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 PRDM4Q9UKN5 801 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 CDH7Q9ULB5 785 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 GIT1Q9Y2X7 761 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 PCDHGA2Q9Y5H1 932 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 MRFAP1Q9Y605 127 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 ZNF292O60281 2723 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 COL4A3Q01955 1670 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 PRR5-ARHGAP8B1AHC4 643 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 LAMTOR5O43504 91 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 SLC37A4O43826 429 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 HNRNPA1P09651 372 aaKnown RBP eCLIP8.94□□□□□ -0.98
NEDD8-207ENST00000533242 FECHP22830 423 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 MLH1P40692 756 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 UBA7P41226 1012 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 SCNN1GP51170 649 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 NPEPPSP55786 919 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 GPC5P78333 572 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 ARHGAP8P85298 464 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 STK4Q13043 487 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 PPP2R5CQ13362 524 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 TTI2Q6NXR4 508 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 HACE1Q8IYU2 909 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 RASSF8Q8NHQ8 419 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 SECISBP2LQ93073 1101 aaKnown RBP8.94□□□□□ -0.98
NEDD8-207ENST00000533242 CEP170P1Q96L14 293 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 DUSP9Q99956 384 aaKnown RBP8.94□□□□□ -0.98
NEDD8-207ENST00000533242 EIF2AQ9BY44 585 aaKnown RBP8.94□□□□□ -0.98
NEDD8-207ENST00000533242 RNF39Q9H2S5 420 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 ABHD10Q9NUJ1 306 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 FBXW11Q9UKB1 542 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 TFR2Q9UP52 801 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 CACNA1IQ9P0X4 2223 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 ITIH6Q6UXX5 1313 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 EML1O00423 815 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 TSPAN1O60635 241 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 LRRN2O75325 713 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 SEC31AO94979 1220 aaKnown RBP8.94□□□□□ -0.98
NEDD8-207ENST00000533242 P4HBP07237 508 aaKnown RBP8.94□□□□□ -0.98
NEDD8-207ENST00000533242 CCDC175P0C221 793 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 OR52Z1P0C646 297 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 CASQ1P31415 396 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 KLK7P49862 253 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 NOTUMQ6P988 496 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 IFNLR1Q8IU57 520 aaPredicted RBP8.94□□□□□ -0.98
NEDD8-207ENST00000533242 RNF149Q8NC42 400 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 GPR62Q9BZJ7 368 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 TRIM10Q9UDY6 481 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 VAV3Q9UKW4 847 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 REXO2Q9Y3B8 237 aaKnown RBP8.94□□□□□ -0.98
NEDD8-207ENST00000533242 FHOD1Q9Y613 1164 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 OTOGLQ3ZCN5 2332 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 NOTCH4Q99466 2003 aa8.94□□□□□ -0.98
NEDD8-207ENST00000533242 TTC26A0AVF1 554 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 F8W810 466 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 LILRB5O75023 590 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 KRT37O76014 449 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 RHOBTB3O94955 611 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 TUBB4AP04350 444 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 POU2F2P09086 479 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 HOXA9P31269 272 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 TXLNAP40222 546 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 ARHGAP25P42331 645 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 PTENP60484 403 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 PFKPQ01813 784 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 LMNB2Q03252 620 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 CSTF1Q05048 431 aaKnown RBP8.93□□□□□ -0.98
NEDD8-207ENST00000533242 GRIK3Q13003 919 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 EMC2Q15006 297 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 SLC44A4Q53GD3 710 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 PARM1Q6UWI2 310 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 C4orf19Q8IY42 314 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 NELL1Q92832 810 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 FGF14Q92915 247 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 B3GALT6Q96L58 329 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 FAM20AQ96MK3 541 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 RPP25Q9BUL9 199 aaKnown RBP8.93□□□□□ -0.98
NEDD8-207ENST00000533242 SRRTQ9BXP5 876 aaKnown RBP8.93□□□□□ -0.98
NEDD8-207ENST00000533242 TRIM9Q9C026 710 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 ZSWIM4Q9H7M6 989 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 ZSCAN32Q9NX65 697 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 DDX25Q9UHL0 483 aaKnown RBP8.93□□□□□ -0.98
NEDD8-207ENST00000533242 ADAM28Q9UKQ2 775 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 VWA8A3KMH1 1905 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 RPL17P18621 184 aaKnown RBP8.93□□□□□ -0.98
NEDD8-207ENST00000533242 PRPHP41219 470 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 ATXN1P54253 815 aaKnown RBP8.93□□□□□ -0.98
NEDD8-207ENST00000533242 UBXN1Q04323 297 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 POU5F1BQ06416 359 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 TFDP1Q14186 410 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 KCNB1Q14721 858 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 FILIP1LQ4L180 1135 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 GALNT17Q6IS24 598 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 OTUD6AQ7L8S5 288 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 GRASPQ7Z6J2 395 aaPredicted RBP8.93□□□□□ -0.98
NEDD8-207ENST00000533242 NEK8Q86SG6 692 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 GLYCTKQ8IVS8 523 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 ZBTB44Q8NCP5 570 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 KIAA0895Q8NCT3 520 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 ZNF507Q8TCN5 953 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms