RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 CFAP73A6NFT4 308 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 NCALDP61601 193 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 SP4Q02446 784 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 CUL2Q13617 745 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 CRELD2Q6UXH1 353 aaPredicted RBP20.43■□□□□ 0.86
VPS28-213ENST00000530983 SRRM1Q8IYB3 904 aaKnown RBP20.43■□□□□ 0.86
VPS28-213ENST00000530983 BBOF1Q8ND07 529 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 EXD1Q8NHP7 514 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 TCP11Q8WWU5 503 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 ATG4CQ96DT6 458 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 HAPLN2Q9GZV7 340 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 NOD2Q9HC29 1040 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 MRPL47Q9HD33 250 aaKnown RBP20.43■□□□□ 0.86
VPS28-213ENST00000530983 GJB6O95452 261 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 PSAPP07602 524 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 GNA15P30679 374 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 GJC1P36383 396 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 CGB2Q6NT52 195 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 TMEM270Q6UE05 265 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 SPATA21Q7Z572 469 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 PHF13Q86YI8 300 aaPredicted RBP20.43■□□□□ 0.86
VPS28-213ENST00000530983 TTLL6Q8N841 843 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 TGS1Q96RS0 853 aaKnown RBP20.43■□□□□ 0.86
VPS28-213ENST00000530983 USTQ9Y2C2 406 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 STYXL1Q9Y6J8 313 aa20.43■□□□□ 0.86
VPS28-213ENST00000530983 MAFGO15525 162 aa20.42■□□□□ 0.86
VPS28-213ENST00000530983 EZRP15311 586 aaKnown RBP20.42■□□□□ 0.86
VPS28-213ENST00000530983 SLC8A1P32418 973 aa20.42■□□□□ 0.86
VPS28-213ENST00000530983 ADCY1Q08828 1119 aa20.42■□□□□ 0.86
VPS28-213ENST00000530983 ZKSCAN8Q15776 578 aaPredicted RBP20.42■□□□□ 0.86
VPS28-213ENST00000530983 TRIM72Q6ZMU5 477 aa20.42■□□□□ 0.86
VPS28-213ENST00000530983 VCPIP1Q96JH7 1222 aa20.42■□□□□ 0.86
VPS28-213ENST00000530983 JPH1Q9HDC5 661 aaPredicted RBP20.42■□□□□ 0.86
VPS28-213ENST00000530983 PRKAG3Q9UGI9 489 aa20.42■□□□□ 0.86
VPS28-213ENST00000530983 AGO2Q9UKV8 859 aaKnown RBP20.42■□□□□ 0.86
VPS28-213ENST00000530983 ARL2BPQ9Y2Y0 163 aa20.42■□□□□ 0.86
VPS28-213ENST00000530983 PCDHB4Q9Y5E5 795 aa20.42■□□□□ 0.86
VPS28-213ENST00000530983 TLR3O15455 904 aaKnown RBP20.42■□□□□ 0.86
VPS28-213ENST00000530983 DKC1O60832 514 aaKnown RBP eCLIP20.42■□□□□ 0.86
VPS28-213ENST00000530983 CLTAP09496 248 aa20.42■□□□□ 0.86
VPS28-213ENST00000530983 STX2P32856 288 aa20.42■□□□□ 0.86
VPS28-213ENST00000530983 STAT4Q14765 748 aa20.42■□□□□ 0.86
VPS28-213ENST00000530983 P3H1Q32P28 736 aa20.42■□□□□ 0.86
VPS28-213ENST00000530983 TLDC1Q6P9B6 456 aa20.42■□□□□ 0.86
VPS28-213ENST00000530983 RBM15Q96T37 977 aaKnown RBP eCLIP20.42■□□□□ 0.86
VPS28-213ENST00000530983 ZNF541Q9H0D2 1346 aa20.42■□□□□ 0.86
VPS28-213ENST00000530983 BAIAP2L1Q9UHR4 511 aa20.42■□□□□ 0.86
VPS28-213ENST00000530983 ZNRF3Q9ULT6 936 aa20.42■□□□□ 0.86
VPS28-213ENST00000530983 SIP14410 1827 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 H0YCG3 227 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 KCNJ2P63252 427 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 BNIP1Q12981 228 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 ARHGEF18Q6ZSZ5 1173 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 PNMA8AQ86V59 439 aaPredicted RBP20.41■□□□□ 0.86
VPS28-213ENST00000530983 ZCCHC9Q8N567 271 aaKnown RBP20.41■□□□□ 0.86
VPS28-213ENST00000530983 GLIS1Q8NBF1 620 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 MAGEB18Q96M61 343 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 ECT2Q9H8V3 914 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 KLHL11Q9NVR0 708 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 ACTL7BQ9Y614 415 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 SCINQ9Y6U3 715 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 RLFQ13129 1914 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 TCF4P15884 667 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 SSR1P43307 286 aaKnown RBP20.41■□□□□ 0.86
VPS28-213ENST00000530983 MAGEA4P43358 317 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 ACTR2P61160 394 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 MKRN3Q13064 507 aaKnown RBP20.41■□□□□ 0.86
VPS28-213ENST00000530983 RIPK1Q13546 671 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 MTERF2Q49AM1 385 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 ATP13A4Q4VNC1 1196 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 ZBTB41Q5SVQ8 909 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 ABHD15Q6UXT9 468 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 GSTA5Q7RTV2 222 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 GBP7Q8N8V2 638 aaPredicted RBP20.41■□□□□ 0.86
VPS28-213ENST00000530983 RBBP8NLQ8NC74 664 aaPredicted RBP20.41■□□□□ 0.86
VPS28-213ENST00000530983 ZBTB45Q96K62 511 aaPredicted RBP20.41■□□□□ 0.86
VPS28-213ENST00000530983 VPS33BQ9H267 617 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 MYOZ2Q9NPC6 264 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 STK32BQ9NY57 414 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 SLC9A2Q9UBY0 812 aa20.41■□□□□ 0.86
VPS28-213ENST00000530983 NFASCO94856 1347 aa20.4■□□□□ 0.86
VPS28-213ENST00000530983 NQO1P15559 274 aaKnown RBP20.4■□□□□ 0.86
VPS28-213ENST00000530983 C1QBPQ07021 282 aaKnown RBP20.4■□□□□ 0.86
VPS28-213ENST00000530983 NFX1Q12986 1120 aaKnown RBP20.4■□□□□ 0.86
VPS28-213ENST00000530983 ZNF268Q14587 947 aaPredicted RBP20.4■□□□□ 0.86
VPS28-213ENST00000530983 CYP4F22Q6NT55 531 aa20.4■□□□□ 0.86
VPS28-213ENST00000530983 MIS18BP1Q6P0N0 1132 aa20.4■□□□□ 0.86
VPS28-213ENST00000530983 FITM2Q8N6M3 262 aa20.4■□□□□ 0.86
VPS28-213ENST00000530983 MAML1Q92585 1016 aa20.4■□□□□ 0.86
VPS28-213ENST00000530983 CCDC77Q9BR77 488 aa20.4■□□□□ 0.86
VPS28-213ENST00000530983 FHDC1Q9C0D6 1143 aaPredicted RBP20.4■□□□□ 0.86
VPS28-213ENST00000530983 RBAKQ9NYW8 714 aaPredicted RBP20.4■□□□□ 0.86
VPS28-213ENST00000530983 CNTN6Q9UQ52 1028 aa20.4■□□□□ 0.86
VPS28-213ENST00000530983 NUB1Q9Y5A7 615 aa20.4■□□□□ 0.86
VPS28-213ENST00000530983 GSTTP1A0A1W2PQM5 241 aa20.39■□□□□ 0.86
VPS28-213ENST00000530983 PI4K2BG5E9Z4 385 aa20.39■□□□□ 0.86
VPS28-213ENST00000530983 LIASO43766 372 aa20.39■□□□□ 0.86
VPS28-213ENST00000530983 ABHD2P08910 425 aa20.39■□□□□ 0.86
VPS28-213ENST00000530983 KRT10P13645 584 aa20.39■□□□□ 0.86
VPS28-213ENST00000530983 RPL7AP62424 266 aaKnown RBP20.39■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms