RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 ZPBP2Q6X784 338 aa25.71■■□□□ 1.71
CPSF1-202ENST00000527827 LEMD2Q8NC56 503 aa25.71■■□□□ 1.71
CPSF1-202ENST00000527827 PNMA5Q96PV4 448 aa25.71■■□□□ 1.71
CPSF1-202ENST00000527827 FAM126AQ9BYI3 521 aaPredicted RBP25.71■■□□□ 1.71
CPSF1-202ENST00000527827 TRPV4Q9HBA0 871 aa25.71■■□□□ 1.71
CPSF1-202ENST00000527827 M0QZQ0 153 aa25.7■■□□□ 1.7
CPSF1-202ENST00000527827 CXCL8P10145 99 aa25.7■■□□□ 1.7
CPSF1-202ENST00000527827 SPAG1Q07617 926 aa25.7■■□□□ 1.7
CPSF1-202ENST00000527827 HYIQ5T013 277 aa25.7■■□□□ 1.7
CPSF1-202ENST00000527827 MAMSTRQ6ZN01 415 aa25.7■■□□□ 1.7
CPSF1-202ENST00000527827 GPR161Q8N6U8 529 aaKnown RBP25.7■■□□□ 1.7
CPSF1-202ENST00000527827 ZSCAN18Q8TBC5 510 aaPredicted RBP25.7■■□□□ 1.7
CPSF1-202ENST00000527827 DEPDC1BQ8WUY9 529 aa25.7■■□□□ 1.7
CPSF1-202ENST00000527827 ASAH2Q9NR71 780 aa25.7■■□□□ 1.7
CPSF1-202ENST00000527827 YIPF1Q9Y548 306 aa25.7■■□□□ 1.7
CPSF1-202ENST00000527827 OAZ2O95190 189 aa25.69■■□□□ 1.7
CPSF1-202ENST00000527827 MARCKSP29966 332 aaPredicted RBP25.69■■□□□ 1.7
CPSF1-202ENST00000527827 LRPAP1P30533 357 aa25.69■■□□□ 1.7
CPSF1-202ENST00000527827 TEAD2Q15562 447 aa25.69■■□□□ 1.7
CPSF1-202ENST00000527827 ZRSR1Q15695 479 aaKnown RBP25.69■■□□□ 1.7
CPSF1-202ENST00000527827 ZBTB6Q15916 424 aa25.69■■□□□ 1.7
CPSF1-202ENST00000527827 SYT2Q8N9I0 419 aaPredicted RBP25.69■■□□□ 1.7
CPSF1-202ENST00000527827 SHKBP1Q8TBC3 707 aa25.69■■□□□ 1.7
CPSF1-202ENST00000527827 FAM3CQ92520 227 aa25.69■■□□□ 1.7
CPSF1-202ENST00000527827 KIF2CQ99661 725 aa25.69■■□□□ 1.7
CPSF1-202ENST00000527827 LRRC3Q9BY71 257 aa25.69■■□□□ 1.7
CPSF1-202ENST00000527827 PLEKHA5Q9HAU0 1116 aa25.69■■□□□ 1.7
CPSF1-202ENST00000527827 TIMM13Q9Y5L4 95 aaPredicted RBP25.69■■□□□ 1.7
CPSF1-202ENST00000527827 PIAS3Q9Y6X2 628 aa25.69■■□□□ 1.7
CPSF1-202ENST00000527827 TTC26A0AVF1 554 aa25.68■■□□□ 1.7
CPSF1-202ENST00000527827 ARNTLO00327 626 aa25.68■■□□□ 1.7
CPSF1-202ENST00000527827 CLDN3O15551 220 aa25.68■■□□□ 1.7
CPSF1-202ENST00000527827 OR4Q2P0C623 313 aa25.68■■□□□ 1.7
CPSF1-202ENST00000527827 TGM1P22735 817 aa25.68■■□□□ 1.7
CPSF1-202ENST00000527827 AARSP49588 968 aaKnown RBP eCLIP25.68■■□□□ 1.7
CPSF1-202ENST00000527827 SMTNP53814 917 aa25.68■■□□□ 1.7
CPSF1-202ENST00000527827 SLC12A3P55017 1021 aa25.68■■□□□ 1.7
CPSF1-202ENST00000527827 YWHAHQ04917 246 aaPredicted RBP25.68■■□□□ 1.7
CPSF1-202ENST00000527827 MFSD6LQ8IWD5 586 aa25.68■■□□□ 1.7
CPSF1-202ENST00000527827 SECISBP2LQ93073 1101 aaKnown RBP25.68■■□□□ 1.7
CPSF1-202ENST00000527827 CRISPLD1Q9H336 500 aa25.68■■□□□ 1.7
CPSF1-202ENST00000527827 LMAN1LQ9HAT1 526 aa25.68■■□□□ 1.7
CPSF1-202ENST00000527827 KCNG1Q9UIX4 513 aa25.68■■□□□ 1.7
CPSF1-202ENST00000527827 CLTAP09496 248 aa25.67■■□□□ 1.7
CPSF1-202ENST00000527827 ATP2C1P98194 919 aaPredicted RBP25.67■■□□□ 1.7
CPSF1-202ENST00000527827 TMC8Q8IU68 726 aa25.67■■□□□ 1.7
CPSF1-202ENST00000527827 RSPRY1Q96DX4 576 aa25.67■■□□□ 1.7
CPSF1-202ENST00000527827 KIF12Q96FN5 646 aa25.67■■□□□ 1.7
CPSF1-202ENST00000527827 PGLYRP2Q96PD5 576 aa25.67■■□□□ 1.7
CPSF1-202ENST00000527827 PLIN2Q99541 437 aa25.67■■□□□ 1.7
CPSF1-202ENST00000527827 IER2Q9BTL4 223 aa25.67■■□□□ 1.7
CPSF1-202ENST00000527827 DNAJC25Q9H1X3 360 aa25.67■■□□□ 1.7
CPSF1-202ENST00000527827 SPTBN2O15020 2390 aa25.67■■□□□ 1.7
CPSF1-202ENST00000527827 HEPACAM2A8MVW5 462 aa25.66■■□□□ 1.7
CPSF1-202ENST00000527827 ZNF263O14978 683 aa25.66■■□□□ 1.7
CPSF1-202ENST00000527827 TNFSF9P41273 254 aa25.66■■□□□ 1.7
CPSF1-202ENST00000527827 GPR88Q9GZN0 384 aa25.66■■□□□ 1.7
CPSF1-202ENST00000527827 NPHP3-ACAD11A0A0J9YXS1 232 aa25.65■■□□□ 1.7
CPSF1-202ENST00000527827 CHRNB1P11230 501 aa25.65■■□□□ 1.7
CPSF1-202ENST00000527827 CYP3A5P20815 502 aa25.65■■□□□ 1.7
CPSF1-202ENST00000527827 CCNE1P24864 410 aa25.65■■□□□ 1.7
CPSF1-202ENST00000527827 MATR3P43243 847 aaKnown RBP eCLIP25.65■■□□□ 1.7
CPSF1-202ENST00000527827 GUCY2FP51841 1108 aa25.65■■□□□ 1.7
CPSF1-202ENST00000527827 ATXN1P54253 815 aaKnown RBP25.65■■□□□ 1.7
CPSF1-202ENST00000527827 NCKAP1LP55160 1127 aa25.65■■□□□ 1.7
CPSF1-202ENST00000527827 CACNB1Q02641 598 aaPredicted RBP25.65■■□□□ 1.7
CPSF1-202ENST00000527827 KCTD17Q8N5Z5 321 aa25.65■■□□□ 1.7
CPSF1-202ENST00000527827 OXCT2Q9BYC2 517 aaPredicted RBP25.65■■□□□ 1.7
CPSF1-202ENST00000527827 PARD6AQ9NPB6 346 aa25.65■■□□□ 1.7
CPSF1-202ENST00000527827 UBQLN1Q9UMX0 589 aaKnown RBP25.65■■□□□ 1.7
CPSF1-202ENST00000527827 ANK1P16157 1881 aa25.65■■□□□ 1.7
CPSF1-202ENST00000527827 A0A1W2PRU2 124 aa25.64■■□□□ 1.7
CPSF1-202ENST00000527827 LACTBL1A8MY62 500 aa25.64■■□□□ 1.7
CPSF1-202ENST00000527827 PLA2G4BP0C869 781 aa25.64■■□□□ 1.7
CPSF1-202ENST00000527827 NRLP54845 237 aa25.64■■□□□ 1.7
CPSF1-202ENST00000527827 MLLT6P55198 1093 aaPredicted RBP25.64■■□□□ 1.7
CPSF1-202ENST00000527827 DUSP4Q13115 394 aa25.64■■□□□ 1.7
CPSF1-202ENST00000527827 GPR17Q13304 367 aa25.64■■□□□ 1.7
CPSF1-202ENST00000527827 GAS6Q14393 721 aa25.64■■□□□ 1.7
CPSF1-202ENST00000527827 ARSHQ5FYA8 562 aa25.64■■□□□ 1.7
CPSF1-202ENST00000527827 KCNN1Q92952 543 aa25.64■■□□□ 1.7
CPSF1-202ENST00000527827 E2F7Q96AV8 911 aa25.64■■□□□ 1.7
CPSF1-202ENST00000527827 SLITRK6Q9H5Y7 841 aa25.64■■□□□ 1.7
CPSF1-202ENST00000527827 KCND2Q9NZV8 630 aa25.64■■□□□ 1.7
CPSF1-202ENST00000527827 OR6C75A6NL08 312 aa25.63■■□□□ 1.69
CPSF1-202ENST00000527827 PRR5-ARHGAP8B1AHC4 643 aa25.63■■□□□ 1.69
CPSF1-202ENST00000527827 PPEF2O14830 753 aa25.63■■□□□ 1.69
CPSF1-202ENST00000527827 FAM189A1O60320 539 aa25.63■■□□□ 1.69
CPSF1-202ENST00000527827 SDHBP21912 280 aa25.63■■□□□ 1.69
CPSF1-202ENST00000527827 CCR3P51677 355 aa25.63■■□□□ 1.69
CPSF1-202ENST00000527827 ARHGAP8P85298 464 aa25.63■■□□□ 1.69
CPSF1-202ENST00000527827 LMNB2Q03252 620 aa25.63■■□□□ 1.69
CPSF1-202ENST00000527827 PPP2R3AQ06190 1150 aa25.63■■□□□ 1.69
CPSF1-202ENST00000527827 PLD1Q13393 1074 aa25.63■■□□□ 1.69
CPSF1-202ENST00000527827 TMEM119Q4V9L6 283 aa25.63■■□□□ 1.69
CPSF1-202ENST00000527827 RILPL1Q5EBL4 403 aa25.63■■□□□ 1.69
CPSF1-202ENST00000527827 STXBP5Q5T5C0 1151 aa25.63■■□□□ 1.69
CPSF1-202ENST00000527827 HAUS6Q7Z4H7 955 aa25.63■■□□□ 1.69
CPSF1-202ENST00000527827 USP37Q86T82 979 aa25.63■■□□□ 1.69
CPSF1-202ENST00000527827 BICD1Q96G01 975 aa25.63■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms