RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 IL1RAPL2Q9NP60 686 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 USP40Q9NVE5 1235 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 FGFR1OP2Q9NVK5 253 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 ARMC1Q9NVT9 282 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 CLIC5Q9NZA1 410 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 CNOT7Q9UIV1 285 aaKnown RBP6.15□□□□□ -1.42
CD44-225ENST00000527326 SCAF8Q9UPN6 1271 aaKnown RBP6.15□□□□□ -1.42
CD44-225ENST00000527326 ERVK-11Q9UQG0 969 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 ZBTB1Q9Y2K1 713 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 NOSIPQ9Y314 301 aaKnown RBP6.15□□□□□ -1.42
CD44-225ENST00000527326 HCN4Q9Y3Q4 1203 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 XRN1Q8IZH2 1706 aaKnown RBP6.15□□□□□ -1.42
CD44-225ENST00000527326 MYH8P13535 1937 aa6.15□□□□□ -1.43
CD44-225ENST00000527326 PVALEFA0A1B0GWK0 134 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 TCP11X1B4DZS4 312 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 H0YC42 278 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 AP3B1O00203 1094 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 ALOX15BO15296 676 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 SGTAO43765 313 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 SNX2O60749 519 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 ENTPD5O75356 428 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 SURF6O75683 361 aaKnown RBP6.14□□□□□ -1.43
CD44-225ENST00000527326 KRT75O95678 551 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 SCG2P13521 617 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 EPHB2P29323 1055 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 KRT2P35908 639 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 PRCPP42785 496 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 RXRGP48443 463 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 CHN2P52757 468 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 TPD52P55327 224 aaPredicted RBP6.14□□□□□ -1.43
CD44-225ENST00000527326 NOP14P78316 857 aaKnown RBP6.14□□□□□ -1.43
CD44-225ENST00000527326 ARHGAP4P98171 946 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 CDR2Q01850 454 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 DNAJC3Q13217 504 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 MED21Q13503 144 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 DPYSQ14117 519 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 PTPAQ15257 358 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 TGFBIQ15582 683 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 CRY1Q16526 586 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 ECM1Q16610 540 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 PHKG1Q16816 387 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 SHROOM1Q2M3G4 852 aaPredicted RBP6.14□□□□□ -1.43
CD44-225ENST00000527326 KHDC1Q4VXA5 237 aaKnown RBP6.14□□□□□ -1.43
CD44-225ENST00000527326 FIGNQ5HY92 759 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 TMEM63BQ5T3F8 832 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 NDUFAF5Q5TEU4 345 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 C6orf163Q5TEZ5 329 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 KIAA1841Q6NSI8 718 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 IZUMO2Q6UXV1 221 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 CCDC81Q6ZN84 652 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 HDGFL2Q7Z4V5 671 aaPredicted RBP6.14□□□□□ -1.43
CD44-225ENST00000527326 ADGRG6Q86SQ4 1221 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 SLC51BQ86UW2 128 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 CD163Q86VB7 1156 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 ADSSL1Q8N142 457 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 FBXL16Q8N461 479 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 MB21D1Q8N884 522 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 LSMEM1Q8N8F7 131 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 ANGPTL6Q8NI99 470 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.14□□□□□ -1.43
CD44-225ENST00000527326 SCFD1Q8WVM8 642 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 C7orf43Q8WVR3 580 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 CKAP2Q8WWK9 683 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 CDKL2Q92772 493 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 SLC7A6OSQ96CW6 309 aaPredicted RBP6.14□□□□□ -1.43
CD44-225ENST00000527326 RMDN1Q96DB5 314 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 DNAJC1Q96KC8 554 aaKnown RBP6.14□□□□□ -1.43
CD44-225ENST00000527326 SPATA17Q96L03 361 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 CCDC138Q96M89 665 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 CEP63Q96MT8 703 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 PSKH2Q96QS6 385 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 MED15Q96RN5 788 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 FNBP1Q96RU3 617 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 DDX50Q9BQ39 737 aaKnown RBP6.14□□□□□ -1.43
CD44-225ENST00000527326 HINFPQ9BQA5 517 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 NEURL2Q9BR09 285 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 AIFM2Q9BRQ8 373 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 UQCC2Q9BRT2 126 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 PLVAPQ9BX97 442 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 TLR10Q9BXR5 811 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 OSBPL6Q9BZF3 934 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 LRRC27Q9C0I9 530 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 RBM38Q9H0Z9 239 aaKnown RBP6.14□□□□□ -1.43
CD44-225ENST00000527326 MYLK2Q9H1R3 596 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 TSPAN10Q9H1Z9 355 aaPredicted RBP6.14□□□□□ -1.43
CD44-225ENST00000527326 TMEM60Q9H2L4 133 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 SLITRK6Q9H5Y7 841 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 MOV10Q9HCE1 1003 aaKnown RBP6.14□□□□□ -1.43
CD44-225ENST00000527326 DISC1Q9NRI5 854 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 KRT82Q9NSB4 513 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 NDE1Q9NXR1 346 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 RGS17Q9UGC6 210 aaPredicted RBP6.14□□□□□ -1.43
CD44-225ENST00000527326 MTRF1LQ9UGC7 380 aaKnown RBP6.14□□□□□ -1.43
CD44-225ENST00000527326 RWDD2AQ9UIY3 292 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 TMEM59LQ9UK28 342 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 PADI4Q9UM07 663 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 UTP11Q9Y3A2 253 aaKnown RBP6.14□□□□□ -1.43
CD44-225ENST00000527326 ZNF536O15090 1300 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 MST1RQ04912 1400 aa6.14□□□□□ -1.43
CD44-225ENST00000527326 ARHGEF28Q8N1W1 1705 aaKnown RBP6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms