RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 NXF3Q9H4D5 531 aaKnown RBP20.24■□□□□ 0.83
VPS28-207ENST00000526977 FAM105AQ9NUU6 356 aa20.24■□□□□ 0.83
VPS28-207ENST00000526977 HES2Q9Y543 173 aa20.24■□□□□ 0.83
VPS28-207ENST00000526977 PCDHB2Q9Y5E7 798 aa20.24■□□□□ 0.83
VPS28-207ENST00000526977 GRID2IPA4D2P6 1211 aa20.23■□□□□ 0.83
VPS28-207ENST00000526977 MEFVO15553 781 aaPredicted RBP20.23■□□□□ 0.83
VPS28-207ENST00000526977 TCP1P17987 556 aaKnown RBP20.23■□□□□ 0.83
VPS28-207ENST00000526977 GALCP54803 685 aa20.23■□□□□ 0.83
VPS28-207ENST00000526977 WDR44Q5JSH3 913 aa20.23■□□□□ 0.83
VPS28-207ENST00000526977 JADE1Q6IE81 842 aa20.23■□□□□ 0.83
VPS28-207ENST00000526977 ALKAL1Q6UXT8 129 aa20.23■□□□□ 0.83
VPS28-207ENST00000526977 EFCAB13Q8IY85 973 aa20.23■□□□□ 0.83
VPS28-207ENST00000526977 FAM71AQ8IYT1 594 aa20.23■□□□□ 0.83
VPS28-207ENST00000526977 PPM1KQ8N3J5 372 aa20.23■□□□□ 0.83
VPS28-207ENST00000526977 SMG8Q8ND04 991 aaKnown RBP20.23■□□□□ 0.83
VPS28-207ENST00000526977 OSBPL7Q9BZF2 842 aa20.23■□□□□ 0.83
VPS28-207ENST00000526977 MTMR12Q9C0I1 747 aa20.23■□□□□ 0.83
VPS28-207ENST00000526977 ARGLU1Q9NWB6 273 aaPredicted RBP20.23■□□□□ 0.83
VPS28-207ENST00000526977 HYOU1Q9Y4L1 999 aa20.23■□□□□ 0.83
VPS28-207ENST00000526977 PARNO95453 639 aaKnown RBP20.22■□□□□ 0.83
VPS28-207ENST00000526977 HLA-DRAP01903 254 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 SKIP12755 728 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 PIK3CAP42336 1068 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 RAB27AP51159 221 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 MFAP3P55082 362 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 TLE2Q04725 743 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 FAAP100Q0VG06 881 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 DSC3Q14574 896 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 TMEM132DQ14C87 1099 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 TRIM60Q495X7 471 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 MSANTD4Q8NCY6 345 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 PAWRQ96IZ0 340 aaKnown RBP20.22■□□□□ 0.83
VPS28-207ENST00000526977 SNX27Q96L92 541 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 NT5C1BQ96P26 610 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 MCOLN1Q9GZU1 580 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 ZNF623O75123 536 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 RECQL4O94761 1208 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 VNN1O95497 513 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 CXCR5P32302 372 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 NOP2P46087 812 aaKnown RBP20.22■□□□□ 0.83
VPS28-207ENST00000526977 NCOA4Q13772 614 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 MBTPS1Q14703 1052 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 MEI1Q5TIA1 1274 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 NECAB2Q7Z6G3 386 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 SLC20A1Q8WUM9 679 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 SHC3Q92529 594 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 TATDN2Q93075 761 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 FAM84AQ96KN4 292 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 RPGRIP1Q96KN7 1286 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 CNTN3Q9P232 1028 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 PARP2Q9UGN5 583 aa20.22■□□□□ 0.83
VPS28-207ENST00000526977 A0A0A6YYK5 440 aaPredicted RBP20.21■□□□□ 0.83
VPS28-207ENST00000526977 TMCO5BA8MYB1 307 aa20.21■□□□□ 0.83
VPS28-207ENST00000526977 FTCDO95954 541 aa20.21■□□□□ 0.83
VPS28-207ENST00000526977 NFICP08651 508 aa20.21■□□□□ 0.83
VPS28-207ENST00000526977 AKAP5P24588 427 aa20.21■□□□□ 0.83
VPS28-207ENST00000526977 USP8P40818 1118 aa20.21■□□□□ 0.83
VPS28-207ENST00000526977 ELMO3Q96BJ8 720 aa20.21■□□□□ 0.83
VPS28-207ENST00000526977 PSMB7Q99436 277 aa20.21■□□□□ 0.83
VPS28-207ENST00000526977 APOL6Q9BWW8 343 aa20.21■□□□□ 0.83
VPS28-207ENST00000526977 FTHL17Q9BXU8 183 aa20.21■□□□□ 0.83
VPS28-207ENST00000526977 IMPG2Q9BZV3 1241 aa20.21■□□□□ 0.83
VPS28-207ENST00000526977 A0A0U1RQF3 1178 aa20.2■□□□□ 0.83
VPS28-207ENST00000526977 RHOXF2BP0C7M4 288 aa20.2■□□□□ 0.83
VPS28-207ENST00000526977 TRPC3Q13507 836 aa20.2■□□□□ 0.83
VPS28-207ENST00000526977 IFI16Q16666 785 aaKnown RBP20.2■□□□□ 0.83
VPS28-207ENST00000526977 SGSM1Q2NKQ1 1148 aa20.2■□□□□ 0.83
VPS28-207ENST00000526977 XKR4Q5GH76 650 aa20.2■□□□□ 0.83
VPS28-207ENST00000526977 MRPL10Q7Z7H8 261 aaKnown RBP20.2■□□□□ 0.83
VPS28-207ENST00000526977 PALB2Q86YC2 1186 aa20.2■□□□□ 0.83
VPS28-207ENST00000526977 KIF12Q96FN5 646 aa20.2■□□□□ 0.83
VPS28-207ENST00000526977 ADAM2Q99965 735 aa20.2■□□□□ 0.83
VPS28-207ENST00000526977 RHOXF2Q9BQY4 288 aa20.2■□□□□ 0.83
VPS28-207ENST00000526977 RNF39Q9H2S5 420 aa20.2■□□□□ 0.83
VPS28-207ENST00000526977 HIPK3Q9H422 1215 aa20.2■□□□□ 0.83
VPS28-207ENST00000526977 TAS2R14Q9NYV8 317 aa20.2■□□□□ 0.83
VPS28-207ENST00000526977 CST3P01034 146 aaPredicted RBP20.2■□□□□ 0.82
VPS28-207ENST00000526977 ENOSF1Q7L5Y1 443 aa20.2■□□□□ 0.82
VPS28-207ENST00000526977 ZNF572Q7Z3I7 529 aaPredicted RBP20.2■□□□□ 0.82
VPS28-207ENST00000526977 LRRC57Q8N9N7 239 aa20.2■□□□□ 0.82
VPS28-207ENST00000526977 TPCN2Q8NHX9 752 aa20.2■□□□□ 0.82
VPS28-207ENST00000526977 PNKPQ96T60 521 aa20.2■□□□□ 0.82
VPS28-207ENST00000526977 PI4K2AQ9BTU6 479 aa20.2■□□□□ 0.82
VPS28-207ENST00000526977 C1orf112Q9NSG2 853 aa20.2■□□□□ 0.82
VPS28-207ENST00000526977 RAB21Q9UL25 225 aa20.2■□□□□ 0.82
VPS28-207ENST00000526977 CYP26A1O43174 497 aa20.19■□□□□ 0.82
VPS28-207ENST00000526977 TMEM253P0C7T8 217 aa20.19■□□□□ 0.82
VPS28-207ENST00000526977 ITGA4P13612 1032 aa20.19■□□□□ 0.82
VPS28-207ENST00000526977 KCNE1P15382 129 aa20.19■□□□□ 0.82
VPS28-207ENST00000526977 GCNT1Q02742 428 aa20.19■□□□□ 0.82
VPS28-207ENST00000526977 RGS18Q9NS28 235 aa20.19■□□□□ 0.82
VPS28-207ENST00000526977 ATP11BQ9Y2G3 1177 aa20.19■□□□□ 0.82
VPS28-207ENST00000526977 XPOTO43592 962 aaKnown RBP20.19■□□□□ 0.82
VPS28-207ENST00000526977 MGEA5O60502 916 aa20.19■□□□□ 0.82
VPS28-207ENST00000526977 CHRNB2P17787 502 aa20.19■□□□□ 0.82
VPS28-207ENST00000526977 ZBTB6Q15916 424 aa20.19■□□□□ 0.82
VPS28-207ENST00000526977 TMCO3Q6UWJ1 677 aa20.19■□□□□ 0.82
VPS28-207ENST00000526977 NOP9Q86U38 636 aaKnown RBP20.19■□□□□ 0.82
VPS28-207ENST00000526977 RPUSD2Q8IZ73 545 aaKnown RBP20.19■□□□□ 0.82
VPS28-207ENST00000526977 C1orf127Q8N9H9 656 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms