RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 TLR3O15455 904 aaKnown RBP22.55■■□□□ 1.2
VPS28-205ENST00000526204 CHKAP35790 457 aa22.55■■□□□ 1.2
VPS28-205ENST00000526204 CNGA2Q16280 664 aa22.55■■□□□ 1.2
VPS28-205ENST00000526204 ANKRD20A8PQ5CZ79 823 aa22.55■■□□□ 1.2
VPS28-205ENST00000526204 CEP128Q6ZU80 1094 aa22.55■■□□□ 1.2
VPS28-205ENST00000526204 PIGWQ7Z7B1 504 aa22.55■■□□□ 1.2
VPS28-205ENST00000526204 EXOC3L1Q86VI1 746 aa22.55■■□□□ 1.2
VPS28-205ENST00000526204 FEZF2Q8TBJ5 459 aa22.55■■□□□ 1.2
VPS28-205ENST00000526204 IPO4Q8TEX9 1081 aaKnown RBP22.55■■□□□ 1.2
VPS28-205ENST00000526204 ZNF526Q8TF50 670 aaPredicted RBP22.55■■□□□ 1.2
VPS28-205ENST00000526204 PRMT1Q99873 361 aaKnown RBP22.55■■□□□ 1.2
VPS28-205ENST00000526204 HEMGNQ9BXL5 484 aa22.55■■□□□ 1.2
VPS28-205ENST00000526204 NSRP1Q9H0G5 558 aaKnown RBP22.55■■□□□ 1.2
VPS28-205ENST00000526204 CCDC113Q9H0I3 377 aa22.55■■□□□ 1.2
VPS28-205ENST00000526204 IP6K2Q9UHH9 426 aa22.55■■□□□ 1.2
VPS28-205ENST00000526204 NUB1Q9Y5A7 615 aa22.55■■□□□ 1.2
VPS28-205ENST00000526204 CFHP08603 1231 aa22.55■■□□□ 1.2
VPS28-205ENST00000526204 GHRP10912 638 aa22.55■■□□□ 1.2
VPS28-205ENST00000526204 LONRF1Q17RB8 773 aa22.55■■□□□ 1.2
VPS28-205ENST00000526204 ICE2Q659A1 982 aa22.55■■□□□ 1.2
VPS28-205ENST00000526204 SAMD15Q9P1V8 674 aa22.55■■□□□ 1.2
VPS28-205ENST00000526204 ADCY3O60266 1144 aa22.54■■□□□ 1.2
VPS28-205ENST00000526204 TAS2R40P59535 323 aa22.54■■□□□ 1.2
VPS28-205ENST00000526204 GRM1Q13255 1194 aa22.54■■□□□ 1.2
VPS28-205ENST00000526204 ITIH4Q14624 930 aa22.54■■□□□ 1.2
VPS28-205ENST00000526204 TRIP13Q15645 432 aaPredicted RBP22.54■■□□□ 1.2
VPS28-205ENST00000526204 ZBTB41Q5SVQ8 909 aa22.54■■□□□ 1.2
VPS28-205ENST00000526204 ZPBP2Q6X784 338 aa22.54■■□□□ 1.2
VPS28-205ENST00000526204 RELL1Q8IUW5 271 aa22.54■■□□□ 1.2
VPS28-205ENST00000526204 CCT6BQ92526 530 aa22.54■■□□□ 1.2
VPS28-205ENST00000526204 ARHGEF2Q92974 986 aaKnown RBP22.54■■□□□ 1.2
VPS28-205ENST00000526204 KLRG1Q96E93 195 aa22.54■■□□□ 1.2
VPS28-205ENST00000526204 FOXP3Q9BZS1 431 aa22.54■■□□□ 1.2
VPS28-205ENST00000526204 RCOR2Q8IZ40 523 aa22.54■■□□□ 1.2
VPS28-205ENST00000526204 ANKRD35Q8N283 1001 aa22.54■■□□□ 1.2
VPS28-205ENST00000526204 OR5B17Q8NGF7 314 aa22.54■■□□□ 1.2
VPS28-205ENST00000526204 CCHCR1Q8TD31 782 aa22.54■■□□□ 1.2
VPS28-205ENST00000526204 FZD9O00144 591 aa22.53■■□□□ 1.2
VPS28-205ENST00000526204 MMP8P22894 467 aa22.53■■□□□ 1.2
VPS28-205ENST00000526204 SSR1P43307 286 aaKnown RBP22.53■■□□□ 1.2
VPS28-205ENST00000526204 ZNF132P52740 706 aa22.53■■□□□ 1.2
VPS28-205ENST00000526204 EFNA5P52803 228 aa22.53■■□□□ 1.2
VPS28-205ENST00000526204 MKRN4PQ13434 485 aaPredicted RBP22.53■■□□□ 1.2
VPS28-205ENST00000526204 TARBP2Q15633 366 aaKnown RBP22.53■■□□□ 1.2
VPS28-205ENST00000526204 NOL9Q5SY16 702 aaKnown RBP22.53■■□□□ 1.2
VPS28-205ENST00000526204 ANGEL2Q5VTE6 544 aaKnown RBP22.53■■□□□ 1.2
VPS28-205ENST00000526204 SMYD5Q6GMV2 418 aa22.53■■□□□ 1.2
VPS28-205ENST00000526204 SEPT14Q6ZU15 432 aa22.53■■□□□ 1.2
VPS28-205ENST00000526204 LRRC34Q8IZ02 419 aa22.53■■□□□ 1.2
VPS28-205ENST00000526204 ZNF606Q8WXB4 792 aa22.53■■□□□ 1.2
VPS28-205ENST00000526204 RBM41Q96IZ5 413 aaKnown RBP22.53■■□□□ 1.2
VPS28-205ENST00000526204 AFG3L2Q9Y4W6 797 aa22.53■■□□□ 1.2
VPS28-205ENST00000526204 LSM8O95777 96 aaKnown RBP22.52■■□□□ 1.2
VPS28-205ENST00000526204 KYNUQ16719 465 aa22.52■■□□□ 1.2
VPS28-205ENST00000526204 PRAMEF18Q5VWM3 479 aa22.52■■□□□ 1.2
VPS28-205ENST00000526204 WDR49Q8IV35 697 aa22.52■■□□□ 1.2
VPS28-205ENST00000526204 BRSK2Q8IWQ3 736 aa22.52■■□□□ 1.2
VPS28-205ENST00000526204 CCDC77Q9BR77 488 aa22.52■■□□□ 1.2
VPS28-205ENST00000526204 PPME1Q9Y570 386 aa22.52■■□□□ 1.2
VPS28-205ENST00000526204 O00370 1275 aa22.52■■□□□ 1.2
VPS28-205ENST00000526204 DNM1LO00429 736 aa22.52■■□□□ 1.2
VPS28-205ENST00000526204 CALB1P05937 261 aa22.52■■□□□ 1.2
VPS28-205ENST00000526204 VIMP08670 466 aaKnown RBP22.52■■□□□ 1.2
VPS28-205ENST00000526204 NFX1Q12986 1120 aaKnown RBP22.52■■□□□ 1.2
VPS28-205ENST00000526204 CAPSQ13938 189 aa22.52■■□□□ 1.2
VPS28-205ENST00000526204 LRRC38Q5VT99 294 aa22.52■■□□□ 1.2
VPS28-205ENST00000526204 DAB2IPQ5VWQ8 1189 aa22.52■■□□□ 1.2
VPS28-205ENST00000526204 FAM160B1Q5W0V3 765 aa22.52■■□□□ 1.2
VPS28-205ENST00000526204 KCNV1Q6PIU1 500 aa22.52■■□□□ 1.2
VPS28-205ENST00000526204 JPH2Q9BR39 696 aaPredicted RBP22.52■■□□□ 1.2
VPS28-205ENST00000526204 USTQ9Y2C2 406 aa22.52■■□□□ 1.2
VPS28-205ENST00000526204 CCT8L1PA6NM43 557 aa22.51■■□□□ 1.19
VPS28-205ENST00000526204 ASS1P00966 412 aaKnown RBP22.51■■□□□ 1.19
VPS28-205ENST00000526204 CNTN2Q02246 1040 aa22.51■■□□□ 1.19
VPS28-205ENST00000526204 CCDC38Q502W7 563 aa22.51■■□□□ 1.19
VPS28-205ENST00000526204 SH3D19Q5HYK7 790 aa22.51■■□□□ 1.19
VPS28-205ENST00000526204 UBR7Q8N806 425 aa22.51■■□□□ 1.19
VPS28-205ENST00000526204 NINJ2Q9NZG7 142 aa22.51■■□□□ 1.19
VPS28-205ENST00000526204 LTBP3Q9NS15 1303 aa22.51■■□□□ 1.19
VPS28-205ENST00000526204 GSTTP1A0A1W2PQM5 241 aa22.51■■□□□ 1.19
VPS28-205ENST00000526204 TMEM191CA6NGB0 347 aa22.51■■□□□ 1.19
VPS28-205ENST00000526204 TMEM191BP0C7N4 346 aa22.51■■□□□ 1.19
VPS28-205ENST00000526204 CD58P19256 250 aa22.51■■□□□ 1.19
VPS28-205ENST00000526204 UBA1P22314 1058 aaKnown RBP22.51■■□□□ 1.19
VPS28-205ENST00000526204 ALDH5A1P51649 535 aaPredicted RBP22.51■■□□□ 1.19
VPS28-205ENST00000526204 MCL1Q07820 350 aa22.51■■□□□ 1.19
VPS28-205ENST00000526204 DRICH1Q6PGQ1 229 aaPredicted RBP22.51■■□□□ 1.19
VPS28-205ENST00000526204 GSTA5Q7RTV2 222 aa22.51■■□□□ 1.19
VPS28-205ENST00000526204 ZNF518BQ9C0D4 1074 aa22.51■■□□□ 1.19
VPS28-205ENST00000526204 FZD1Q9UP38 647 aa22.51■■□□□ 1.19
VPS28-205ENST00000526204 PPP2R3BQ9Y5P8 575 aa22.51■■□□□ 1.19
VPS28-205ENST00000526204 MYH9P35579 1960 aaKnown RBP22.5■■□□□ 1.19
VPS28-205ENST00000526204 MAFO75444 373 aaPredicted RBP22.5■■□□□ 1.19
VPS28-205ENST00000526204 TOM1L1O75674 476 aa22.5■■□□□ 1.19
VPS28-205ENST00000526204 RASSF9O75901 435 aa22.5■■□□□ 1.19
VPS28-205ENST00000526204 TJP3O95049 919 aa22.5■■□□□ 1.19
VPS28-205ENST00000526204 KLRC2P26717 231 aa22.5■■□□□ 1.19
VPS28-205ENST00000526204 SCTRP47872 440 aa22.5■■□□□ 1.19
VPS28-205ENST00000526204 VPS41P49754 854 aa22.5■■□□□ 1.19
VPS28-205ENST00000526204 STAT5BP51692 787 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms