RNA–Protein interactions for RNA: ENST00000514830.5

PDLIM5-220, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 802 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-220ENST00000514830 AGAP1Q9UPQ3 857 aa12.88□□□□□ -0.35
PDLIM5-220ENST00000514830 FAN1Q9Y2M0 1017 aa12.88□□□□□ -0.35
PDLIM5-220ENST00000514830 R3HCC1Q9Y3T6 440 aaKnown RBP12.88□□□□□ -0.35
PDLIM5-220ENST00000514830 PLXNA4Q9HCM2 1894 aa12.88□□□□□ -0.35
PDLIM5-220ENST00000514830 CHD9Q3L8U1 2897 aa12.88□□□□□ -0.35
PDLIM5-220ENST00000514830 ARHGEF37A1IGU5 675 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 CASTOR2A6NHX0 329 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 KPNA7A9QM74 516 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 C5orf67F2Z3F1 127 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 M0QZQ0 153 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 NRP1O14786 923 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 KRT19P08727 400 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 P4HA1P13674 534 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 PPM1AP35813 382 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 SLC11A1P49279 550 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 ALDH7A1P49419 539 aaKnown RBP12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 BCAR1P56945 870 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 NOP14P78316 857 aaKnown RBP12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 SMAD3P84022 425 aaKnown RBP12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 ELAVL2Q12926 359 aaKnown RBP12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 SYCP1Q15431 976 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 RAB30Q15771 203 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 ZNF699Q32M78 642 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 WDR44Q5JSH3 913 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 FAM117BQ6P1L5 589 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 KCNT2Q6UVM3 1135 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 ENOSF1Q7L5Y1 443 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 GPR65Q8IYL9 337 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 RNF168Q8IYW5 571 aaPredicted RBP12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 COLGALT1Q8NBJ5 622 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 C3orf58Q8NDZ4 430 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 SUSD3Q96L08 255 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 ZNF558Q96NG5 402 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 SAMD11Q96NU1 681 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 PAAF1Q9BRP4 392 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 PLVAPQ9BX97 442 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 BCO2Q9BYV7 579 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 EDEM3Q9BZQ6 932 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 TRIM5Q9C035 493 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 MARCH5Q9NX47 278 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 APEX2Q9UBZ4 518 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 ADAM28Q9UKQ2 775 aa12.87□□□□□ -0.35
PDLIM5-220ENST00000514830 LINC01553A4QN01 128 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 PES1O00541 588 aaKnown RBP12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 PPEF2O14830 753 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 TRAPPC3O43617 180 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 B3GAT3O94766 335 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 KIF4AO95239 1232 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 CYP11A1P05108 521 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 RB1P06400 928 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 SLC9A1P19634 815 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 TBXAS1P24557 533 aaPredicted RBP12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 CDC25BP30305 580 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 ZNF75DP51815 510 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 PLCB3Q01970 1234 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 ZNF667Q5HYK9 610 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 KLHDC7AQ5VTJ3 777 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 SCARA3Q6AZY7 606 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 SLC39A11Q8N1S5 342 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 TTC39CQ8N584 583 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 TOP6BLQ8N6T0 577 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 IGSF21Q96ID5 467 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 NT5C1BQ96P26 610 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 CRACR2AQ9BSW2 395 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 NUP58Q9BVL2 599 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 NIF3L1Q9GZT8 377 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 CYP3A43Q9HB55 503 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 APOBEC3GQ9HC16 384 aaKnown RBP12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 NUB1Q9Y5A7 615 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 PCDHB12Q9Y5F1 795 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 TRANK1O15050 2925 aa12.86□□□□□ -0.35
PDLIM5-220ENST00000514830 LAMA2P24043 3122 aaKnown RBP12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 LCHNA4D1U4 455 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 SYN3O14994 580 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 SPTLC1O15269 473 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 LRRN2O75325 713 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 TACC1O75410 805 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 NOL4O94818 638 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 TYMPP19971 482 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 BMPR1AP36894 532 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 ASPAP45381 313 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 OR1G1P47890 313 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 ERVK-21P61565 698 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 WDR72Q3MJ13 1102 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 PHLDB3Q6NSJ2 640 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 VSTM4Q8IW00 320 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 TMEM86AQ8N2M4 240 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 FAM161BQ96MY7 647 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 NAA15Q9BXJ9 866 aaKnown RBP12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 TTYH3Q9C0H2 523 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 GANQ9H2C0 597 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 SPG21Q9NZD8 308 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 HCSTQ9UBK5 93 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 DSEQ9UL01 958 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 LZTS1Q9Y250 596 aa12.85□□□□□ -0.35
PDLIM5-220ENST00000514830 SF3B1O75533 1304 aaKnown RBP eCLIP12.85□□□□□ -0.353e-6■■■■■ 150.5
PDLIM5-220ENST00000514830 A0A1W2PQJ5 194 aa12.84□□□□□ -0.35
PDLIM5-220ENST00000514830 GRXCR1A8MXD5 290 aa12.84□□□□□ -0.35
PDLIM5-220ENST00000514830 ITGB1P05556 798 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms