RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 PACSIN1Q9BY11 444 aa6.78□□□□□ -1.32
NUP54-209ENST00000510569 LRRC3CA6NJW4 275 aa6.77□□□□□ -1.33
NUP54-209ENST00000510569 FZD9O00144 591 aa6.77□□□□□ -1.33
NUP54-209ENST00000510569 HTRA2O43464 458 aaPredicted RBP6.77□□□□□ -1.33
NUP54-209ENST00000510569 CD1AP06126 327 aa6.77□□□□□ -1.33
NUP54-209ENST00000510569 EDNRBP24530 442 aa6.77□□□□□ -1.33
NUP54-209ENST00000510569 RPS7P62081 194 aaKnown RBP6.77□□□□□ -1.33
NUP54-209ENST00000510569 TLE1Q04724 770 aa6.77□□□□□ -1.33
NUP54-209ENST00000510569 ZNF844Q08AG5 666 aa6.77□□□□□ -1.33
NUP54-209ENST00000510569 SYDE2Q5VT97 1194 aa6.77□□□□□ -1.33
NUP54-209ENST00000510569 TMPRSS9Q7Z410 1059 aa6.77□□□□□ -1.33
NUP54-209ENST00000510569 FAXDC2Q96IV6 333 aa6.77□□□□□ -1.33
NUP54-209ENST00000510569 TIMP4Q99727 224 aa6.77□□□□□ -1.33
NUP54-209ENST00000510569 CALCOCO1Q9P1Z2 691 aa6.77□□□□□ -1.33
NUP54-209ENST00000510569 ARPP21Q9UBL0 812 aaPredicted RBP6.77□□□□□ -1.33
NUP54-209ENST00000510569 LIMCH1Q9UPQ0 1083 aa6.77□□□□□ -1.33
NUP54-209ENST00000510569 ATP8A1Q9Y2Q0 1164 aa6.77□□□□□ -1.33
NUP54-209ENST00000510569 ENTPD2Q9Y5L3 495 aa6.77□□□□□ -1.33
NUP54-209ENST00000510569 CCDC151A5D8V7 595 aa6.76□□□□□ -1.33
NUP54-209ENST00000510569 PCDHGA12O60330 932 aa6.76□□□□□ -1.33
NUP54-209ENST00000510569 SUN1O94901 812 aa6.76□□□□□ -1.33
NUP54-209ENST00000510569 MT-CO1P00395 513 aa6.76□□□□□ -1.33
NUP54-209ENST00000510569 ANXA11P50995 505 aaKnown RBP6.76□□□□□ -1.33
NUP54-209ENST00000510569 MAPK10P53779 464 aa6.76□□□□□ -1.33
NUP54-209ENST00000510569 ZNF280AP59817 542 aaPredicted RBP6.76□□□□□ -1.33
NUP54-209ENST00000510569 FOXF2Q12947 444 aa6.76□□□□□ -1.33
NUP54-209ENST00000510569 C3orf36Q3SXR2 165 aa6.76□□□□□ -1.33
NUP54-209ENST00000510569 ZNF384Q8TF68 577 aa6.76□□□□□ -1.33
NUP54-209ENST00000510569 PCDHGA9Q9Y5G4 932 aaKnown RBP6.76□□□□□ -1.33
NUP54-209ENST00000510569 PCDHGA8Q9Y5G5 932 aa6.76□□□□□ -1.33
NUP54-209ENST00000510569 PCDHGA7Q9Y5G6 932 aa6.76□□□□□ -1.33
NUP54-209ENST00000510569 PCDHGA6Q9Y5G7 932 aa6.76□□□□□ -1.33
NUP54-209ENST00000510569 PCDHGA3Q9Y5H0 932 aa6.76□□□□□ -1.33
NUP54-209ENST00000510569 KLHL33A6NCF5 533 aa6.75□□□□□ -1.33
NUP54-209ENST00000510569 CDK4P11802 303 aa6.75□□□□□ -1.33
NUP54-209ENST00000510569 WT1P19544 449 aaPredicted RBP6.75□□□□□ -1.33
NUP54-209ENST00000510569 POU6F2P78424 691 aaPredicted RBP6.75□□□□□ -1.33
NUP54-209ENST00000510569 DYRK1AQ13627 763 aa6.75□□□□□ -1.33
NUP54-209ENST00000510569 IL10RAQ13651 578 aa6.75□□□□□ -1.33
NUP54-209ENST00000510569 ACAP2Q15057 778 aa6.75□□□□□ -1.33
NUP54-209ENST00000510569 ABCB5Q2M3G0 1257 aa6.75□□□□□ -1.33
NUP54-209ENST00000510569 GRASPQ7Z6J2 395 aaPredicted RBP6.75□□□□□ -1.33
NUP54-209ENST00000510569 PEG10Q86TG7 708 aaKnown RBP6.75□□□□□ -1.33
NUP54-209ENST00000510569 ADGRG5Q8IZF4 528 aa6.75□□□□□ -1.33
NUP54-209ENST00000510569 TMIEQ8NEW7 156 aa6.75□□□□□ -1.33
NUP54-209ENST00000510569 LPIN2Q92539 896 aa6.75□□□□□ -1.33
NUP54-209ENST00000510569 DMRTA2Q96SC8 542 aa6.75□□□□□ -1.33
NUP54-209ENST00000510569 SPC25Q9HBM1 224 aa6.75□□□□□ -1.33
NUP54-209ENST00000510569 ASB6Q9NWX5 421 aa6.75□□□□□ -1.33
NUP54-209ENST00000510569 CCDC195A0A1B0GUA6 201 aa6.74□□□□□ -1.33
NUP54-209ENST00000510569 CCDC154A6NI56 674 aa6.74□□□□□ -1.33
NUP54-209ENST00000510569 E7ENX8 843 aa6.74□□□□□ -1.33
NUP54-209ENST00000510569 ORC4O43929 436 aa6.74□□□□□ -1.33
NUP54-209ENST00000510569 ANXA1P04083 346 aa6.74□□□□□ -1.33
NUP54-209ENST00000510569 GATA3P23771 443 aa6.74□□□□□ -1.33
NUP54-209ENST00000510569 TAP2Q03519 686 aa6.74□□□□□ -1.33
NUP54-209ENST00000510569 PPP4R3AQ6IN85 833 aa6.74□□□□□ -1.33
NUP54-209ENST00000510569 SRRM1Q8IYB3 904 aaKnown RBP6.74□□□□□ -1.33
NUP54-209ENST00000510569 CFAP52Q8N1V2 620 aa6.74□□□□□ -1.33
NUP54-209ENST00000510569 NSUN6Q8TEA1 469 aaKnown RBP6.74□□□□□ -1.33
NUP54-209ENST00000510569 COA7Q96BR5 231 aa6.74□□□□□ -1.33
NUP54-209ENST00000510569 SARAFQ96BY9 339 aa6.74□□□□□ -1.33
NUP54-209ENST00000510569 TEKT5Q96M29 485 aa6.74□□□□□ -1.33
NUP54-209ENST00000510569 TRHDEQ9UKU6 1024 aa6.74□□□□□ -1.33
NUP54-209ENST00000510569 PCDHB1Q9Y5F3 818 aa6.74□□□□□ -1.33
NUP54-209ENST00000510569 GRIA3P42263 894 aa6.73□□□□□ -1.33
NUP54-209ENST00000510569 PROK1P58294 105 aa6.73□□□□□ -1.33
NUP54-209ENST00000510569 MC2RQ01718 297 aa6.73□□□□□ -1.33
NUP54-209ENST00000510569 FPGSQ05932 587 aa6.73□□□□□ -1.33
NUP54-209ENST00000510569 PIGFQ07326 219 aa6.73□□□□□ -1.33
NUP54-209ENST00000510569 HLXQ14774 488 aaPredicted RBP6.73□□□□□ -1.33
NUP54-209ENST00000510569 PTPRRQ15256 657 aa6.73□□□□□ -1.33
NUP54-209ENST00000510569 CD300EQ496F6 205 aaPredicted RBP6.73□□□□□ -1.33
NUP54-209ENST00000510569 KAZNQ674X7 775 aa6.73□□□□□ -1.33
NUP54-209ENST00000510569 GADL1Q6ZQY3 521 aa6.73□□□□□ -1.33
NUP54-209ENST00000510569 PDPRQ8NCN5 879 aa6.73□□□□□ -1.33
NUP54-209ENST00000510569 SLC30A5Q8TAD4 765 aa6.73□□□□□ -1.33
NUP54-209ENST00000510569 ANKS1AQ92625 1134 aa6.73□□□□□ -1.33
NUP54-209ENST00000510569 FBXL20Q96IG2 436 aa6.73□□□□□ -1.33
NUP54-209ENST00000510569 PGBD1Q96JS3 809 aa6.73□□□□□ -1.33
NUP54-209ENST00000510569 CLPTM1LQ96KA5 538 aa6.73□□□□□ -1.33
NUP54-209ENST00000510569 IL17RBQ9NRM6 502 aa6.73□□□□□ -1.33
NUP54-209ENST00000510569 SLC45A2Q9UMX9 530 aa6.73□□□□□ -1.33
NUP54-209ENST00000510569 XPOTO43592 962 aaKnown RBP6.72□□□□□ -1.33
NUP54-209ENST00000510569 MYBL2P10244 700 aa6.72□□□□□ -1.33
NUP54-209ENST00000510569 MTMR1Q13613 665 aa6.72□□□□□ -1.33
NUP54-209ENST00000510569 TXNRD1Q16881 649 aa6.72□□□□□ -1.33
NUP54-209ENST00000510569 MICALCLQ6ZW33 695 aa6.72□□□□□ -1.33
NUP54-209ENST00000510569 MYCBPAPQ8TBZ2 947 aa6.72□□□□□ -1.33
NUP54-209ENST00000510569 TFAP2BQ92481 460 aa6.72□□□□□ -1.33
NUP54-209ENST00000510569 SNX19Q92543 992 aa6.72□□□□□ -1.33
NUP54-209ENST00000510569 KAT5Q92993 513 aa6.72□□□□□ -1.33
NUP54-209ENST00000510569 LRIG1Q96JA1 1093 aa6.72□□□□□ -1.33
NUP54-209ENST00000510569 CFAP20Q9Y6A4 193 aaKnown RBP6.72□□□□□ -1.33
NUP54-209ENST00000510569 SHTN1A0MZ66 631 aa6.71□□□□□ -1.34
NUP54-209ENST00000510569 WDR27A2RRH5 827 aa6.71□□□□□ -1.34
NUP54-209ENST00000510569 E9PLN8 166 aa6.71□□□□□ -1.34
NUP54-209ENST00000510569 ELFN1P0C7U0 828 aa6.71□□□□□ -1.34
NUP54-209ENST00000510569 KIF23Q02241 960 aaPredicted RBP6.71□□□□□ -1.34
NUP54-209ENST00000510569 PREPLQ4J6C6 727 aaPredicted RBP6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms