RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 JAM2P57087 298 aa8.91□□□□□ -0.98
USP54-215ENST00000497106 MYL6P60660 151 aa8.91□□□□□ -0.98
USP54-215ENST00000497106 TDRD10Q5VZ19 366 aaKnown RBP8.91□□□□□ -0.98
USP54-215ENST00000497106 GJB7Q6PEY0 223 aa8.91□□□□□ -0.98
USP54-215ENST00000497106 GPIHBP1Q8IV16 184 aa8.91□□□□□ -0.98
USP54-215ENST00000497106 POP1Q99575 1024 aaKnown RBP8.91□□□□□ -0.98
USP54-215ENST00000497106 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.91□□□□□ -0.98
USP54-215ENST00000497106 LRRC4Q9HBW1 653 aa8.91□□□□□ -0.98
USP54-215ENST00000497106 BARX2Q9UMQ3 279 aaPredicted RBP8.91□□□□□ -0.98
USP54-215ENST00000497106 POLR2AP24928 1970 aaKnown RBP8.91□□□□□ -0.98
USP54-215ENST00000497106 MBLAC1A4D2B0 266 aaPredicted RBP8.91□□□□□ -0.98
USP54-215ENST00000497106 GOLGA6L10A6NI86 522 aa8.91□□□□□ -0.98
USP54-215ENST00000497106 M0QYV0 167 aa8.91□□□□□ -0.98
USP54-215ENST00000497106 FAM163BP0C2L3 166 aa8.91□□□□□ -0.98
USP54-215ENST00000497106 MESDQ14696 234 aa8.91□□□□□ -0.98
USP54-215ENST00000497106 EEF1DP3Q658K8 133 aa8.91□□□□□ -0.98
USP54-215ENST00000497106 ZNF571Q7Z3V5 609 aaPredicted RBP8.91□□□□□ -0.98
USP54-215ENST00000497106 IFT20Q8IY31 132 aa8.91□□□□□ -0.98
USP54-215ENST00000497106 NUP85Q9BW27 656 aa8.91□□□□□ -0.98
USP54-215ENST00000497106 MRPL9Q9BYD2 267 aaKnown RBP8.91□□□□□ -0.98
USP54-215ENST00000497106 RAB17Q9H0T7 212 aa8.91□□□□□ -0.98
USP54-215ENST00000497106 SNX9Q9Y5X1 595 aa8.91□□□□□ -0.98
USP54-215ENST00000497106 RPL9P32969 192 aaKnown RBP8.9□□□□□ -0.98
USP54-215ENST00000497106 LHX1P48742 406 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 LONRF2Q1L5Z9 754 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 GLE1Q53GS7 698 aaKnown RBP8.9□□□□□ -0.98
USP54-215ENST00000497106 FBXO47Q5MNV8 452 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 NAA35Q5VZE5 725 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 SND1Q7KZF4 910 aaKnown RBP eCLIP8.9□□□□□ -0.98
USP54-215ENST00000497106 TMEM86AQ8N2M4 240 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 AVENQ9NQS1 362 aaPredicted RBP8.9□□□□□ -0.98
USP54-215ENST00000497106 ASNSD1Q9NWL6 643 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 GABRQQ9UN88 632 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 TREHO43280 583 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 LPXNO60711 386 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 RECQL4O94761 1208 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 VEGFBP49765 207 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 RWDD2BP57060 319 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 LMNB2Q03252 620 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 CLEC16AQ2KHT3 1053 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 SPOUT1Q5T280 376 aaKnown RBP8.9□□□□□ -0.98
USP54-215ENST00000497106 TMEM139Q8IV31 216 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 RBM41Q96IZ5 413 aaKnown RBP8.9□□□□□ -0.98
USP54-215ENST00000497106 PI4K2AQ9BTU6 479 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 KATNBL1Q9H079 304 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 ARFGAP3Q9NP61 516 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 CISHQ9NSE2 258 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 DDX56Q9NY93 547 aaKnown RBP8.9□□□□□ -0.98
USP54-215ENST00000497106 PCDHB7Q9Y5E2 793 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 HAS3O00219 553 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 ACLYP53396 1101 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 C1QBPQ07021 282 aaKnown RBP8.9□□□□□ -0.98
USP54-215ENST00000497106 BRD3Q15059 726 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 PKN2Q16513 984 aaKnown RBP8.9□□□□□ -0.98
USP54-215ENST00000497106 SLC39A4Q6P5W5 647 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 WDR59Q6PJI9 974 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 SIX6OS1Q8N1H7 587 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 LRRC45Q96CN5 670 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 RNF208Q9H0X6 261 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 A0A0G2JMZ2 1700 aa8.9□□□□□ -0.98
USP54-215ENST00000497106 A0A087X0T9 212 aa8.9□□□□□ -0.99
USP54-215ENST00000497106 B4GALT5O43286 388 aa8.9□□□□□ -0.99
USP54-215ENST00000497106 NOL4O94818 638 aa8.9□□□□□ -0.99
USP54-215ENST00000497106 FAM228BP0C875 321 aa8.9□□□□□ -0.99
USP54-215ENST00000497106 ELAVL2Q12926 359 aaKnown RBP8.9□□□□□ -0.99
USP54-215ENST00000497106 SEZ6Q53EL9 994 aa8.9□□□□□ -0.99
USP54-215ENST00000497106 PHLDB3Q6NSJ2 640 aa8.9□□□□□ -0.99
USP54-215ENST00000497106 MTIF3Q9H2K0 278 aaKnown RBP8.9□□□□□ -0.99
USP54-215ENST00000497106 RSAD1Q9HA92 442 aa8.9□□□□□ -0.99
USP54-215ENST00000497106 INPP5FQ9Y2H2 1132 aa8.9□□□□□ -0.99
USP54-215ENST00000497106 MRFAP1Q9Y605 127 aa8.9□□□□□ -0.99
USP54-215ENST00000497106 STAU1O95793 577 aaKnown RBP8.89□□□□□ -0.99
USP54-215ENST00000497106 DRP2Q13474 957 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 OR6B2Q6IFH4 312 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 TAS1R3Q7RTX0 852 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 COLEC11Q9BWP8 271 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 MTRF1LQ9UGC7 380 aaKnown RBP8.89□□□□□ -0.99
USP54-215ENST00000497106 ANAPC7Q9UJX3 599 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 UTP11Q9Y3A2 253 aaKnown RBP8.89□□□□□ -0.99
USP54-215ENST00000497106 CES2O00748 559 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 SGPL1O95470 568 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 GJC1P36383 396 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 TAF12Q16514 161 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 C11orf63Q6NUN7 778 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 CDR2LQ86X02 465 aaPredicted RBP8.89□□□□□ -0.99
USP54-215ENST00000497106 DCP1BQ8IZD4 617 aaKnown RBP8.89□□□□□ -0.99
USP54-215ENST00000497106 TATDN2Q93075 761 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 C18orf8Q96DM3 657 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 TMEM176AQ96HP8 235 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 SNX27Q96L92 541 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 C11orf70Q9BRQ4 267 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 ST3GAL5Q9UNP4 418 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 USTQ9Y2C2 406 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 OTOFQ9HC10 1997 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 NCANO14594 1321 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 EFCAB14O75071 495 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 GAS8O95995 478 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 COL6A1P12109 1028 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 PIGHQ14442 188 aaPredicted RBP8.89□□□□□ -0.99
USP54-215ENST00000497106 PDZD4Q76G19 769 aaPredicted RBP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms