RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 TAF6P49848 677 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 VCPP55072 806 aaKnown RBP13.8□□□□□ -0.2
PTPRF-215ENST00000496447 DHX34Q14147 1143 aaKnown RBP13.8□□□□□ -0.2
PTPRF-215ENST00000496447 HIF1AQ16665 826 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 USP6NLQ92738 828 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 KCNF1Q9H3M0 494 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 FBXO28Q9NVF7 368 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 HDAC6Q9UBN7 1215 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 LIMA1Q9UHB6 759 aaKnown RBP13.8□□□□□ -0.2
PTPRF-215ENST00000496447 NAGPAQ9UK23 515 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 ANTXR2P58335 489 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 GOLGA7BQ2TAP0 167 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 STAMBPL1Q96FJ0 436 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 TMEM169Q96HH4 297 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 TMEM8AQ9HCN3 771 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 TARSL2A2RTX5 802 aaKnown RBP13.8□□□□□ -0.2
PTPRF-215ENST00000496447 PIGHQ14442 188 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-215ENST00000496447 C10orf120Q5SQS8 335 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 ACBD5Q5T8D3 534 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-215ENST00000496447 FAM95CA0A1B0GW59 222 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 DDX5P17844 614 aaKnown RBP13.79□□□□□ -0.2
PTPRF-215ENST00000496447 NCAPHQ15003 741 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 EFTUD2Q15029 972 aaKnown RBP eCLIP13.79□□□□□ -0.22e-6■■■■□ 21.6
PTPRF-215ENST00000496447 GRAMD1BQ3KR37 738 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 CCDC144BQ3MJ40 725 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 MEI1Q5TIA1 1274 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 GSPT2Q8IYD1 628 aaKnown RBP13.79□□□□□ -0.2
PTPRF-215ENST00000496447 ATL2Q8NHH9 583 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 PIP4K2CQ8TBX8 421 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 COG1Q8WTW3 980 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 HPDLQ96IR7 371 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 NIF3L1Q9GZT8 377 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 CATSPERBQ9H7T0 1116 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 ANLNQ9NQW6 1124 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 PCDHGB4Q9UN71 923 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 GPR182O15218 404 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 WEE2P0C1S8 567 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 MAGOHP61326 146 aaKnown RBP13.79□□□□□ -0.2
PTPRF-215ENST00000496447 EDRF1Q3B7T1 1238 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 CLMNQ96JQ2 1002 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 SLC30A1Q9Y6M5 507 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 GAS2O43903 313 aaKnown RBP13.79□□□□□ -0.2
PTPRF-215ENST00000496447 ODC1P11926 461 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 GFAPP14136 432 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 UCHL3P15374 230 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 BACE1P56817 501 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 ACER1Q8TDN7 264 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 TARS2Q9BW92 718 aaKnown RBP13.79□□□□□ -0.2
PTPRF-215ENST00000496447 MROH8Q9H579 483 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 TAF1DQ9H5J8 278 aaPredicted RBP13.79□□□□□ -0.2
PTPRF-215ENST00000496447 MLXIPLQ9NP71 852 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 MAD2L2Q9UI95 211 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 EIF3HO15372 352 aaKnown RBP eCLIP13.79□□□□□ -0.23e-7■■□□□ 11.7
PTPRF-215ENST00000496447 TLR2O60603 784 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 SERPIND1P05546 499 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 BRAFP15056 766 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 PDAP1Q13442 181 aaKnown RBP13.79□□□□□ -0.2
PTPRF-215ENST00000496447 P3H1Q32P28 736 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 SYCP2LQ5T4T6 812 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 MTHFD1LQ6UB35 978 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 ADCK2Q7Z695 626 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 KCTD17Q8N5Z5 321 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 SLC35G2Q8TBE7 412 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 TMEM117Q9H0C3 514 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 UNC45AQ9H3U1 944 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 ZFP69BQ9UJL9 534 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 ARHGAP10A1A4S6 786 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 GYG2O15488 501 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 DCAF6Q58WW2 860 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 TDRD10Q5VZ19 366 aaKnown RBP13.79□□□□□ -0.2
PTPRF-215ENST00000496447 CHSY1Q86X52 802 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 SCFD1Q8WVM8 642 aa13.79□□□□□ -0.2
PTPRF-215ENST00000496447 ABI2Q9NYB9 513 aaPredicted RBP13.79□□□□□ -0.2
PTPRF-215ENST00000496447 UBQLN1Q9UMX0 589 aaKnown RBP13.79□□□□□ -0.2
PTPRF-215ENST00000496447 TWF1Q12792 350 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 STK4Q13043 487 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 ANKMY2Q8IV38 441 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 UBA3Q8TBC4 463 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 CYTH2Q99418 400 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 EML4Q9HC35 981 aaKnown RBP13.78□□□□□ -0.2
PTPRF-215ENST00000496447 SENP2Q9HC62 589 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 MRPL40Q9NQ50 206 aaKnown RBP13.78□□□□□ -0.2
PTPRF-215ENST00000496447 SENP1Q9P0U3 644 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 FAM200BP0CF97 657 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 FXR2P51116 673 aaKnown RBP eCLIP13.78□□□□□ -0.2
PTPRF-215ENST00000496447 LAMB3Q13751 1172 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 ZDHHC15Q96MV8 337 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 YIPF2Q9BWQ6 316 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 ASPSCR1Q9BZE9 553 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 KDM4CQ9H3R0 1056 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 KLK14Q9P0G3 267 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 PGK2P07205 417 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 PDIA6Q15084 440 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 SLC18A3Q16572 532 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 ARRDC4Q8NCT1 418 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 RFX5P48382 616 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-215ENST00000496447 EFHC1Q5JVL4 640 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 POLR3CQ9BUI4 534 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-215ENST00000496447 EPN3Q9H201 632 aa13.78□□□□□ -0.2
PTPRF-215ENST00000496447 SMYD3Q9H7B4 428 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms