RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 KELP23276 732 aa5.46□□□□□ -1.54
VPS50-219ENST00000495039 SCAND1P57086 179 aa5.46□□□□□ -1.54
VPS50-219ENST00000495039 TUBA4AP68366 448 aa5.46□□□□□ -1.54
VPS50-219ENST00000495039 SRSF2Q01130 221 aaKnown RBP5.46□□□□□ -1.54
VPS50-219ENST00000495039 DYRK1AQ13627 763 aa5.46□□□□□ -1.54
VPS50-219ENST00000495039 DDX46Q7L014 1031 aaKnown RBP5.46□□□□□ -1.54
VPS50-219ENST00000495039 RASAL3Q86YV0 1011 aa5.46□□□□□ -1.54
VPS50-219ENST00000495039 SNX19Q92543 992 aa5.46□□□□□ -1.54
VPS50-219ENST00000495039 RPL36ALQ969Q0 106 aaKnown RBP5.46□□□□□ -1.54
VPS50-219ENST00000495039 NRIP3Q9NQ35 241 aa5.46□□□□□ -1.54
VPS50-219ENST00000495039 CTTNBP2NLQ9P2B4 639 aa5.46□□□□□ -1.54
VPS50-219ENST00000495039 PCDHGA2Q9Y5H1 932 aa5.46□□□□□ -1.54
VPS50-219ENST00000495039 URI1O94763 535 aaPredicted RBP5.45□□□□□ -1.54
VPS50-219ENST00000495039 PPP3CBP16298 524 aa5.45□□□□□ -1.54
VPS50-219ENST00000495039 ANXA11P50995 505 aaKnown RBP5.45□□□□□ -1.54
VPS50-219ENST00000495039 NXPH1P58417 271 aa5.45□□□□□ -1.54
VPS50-219ENST00000495039 TFF2Q03403 129 aa5.45□□□□□ -1.54
VPS50-219ENST00000495039 ITIH3Q06033 890 aa5.45□□□□□ -1.54
VPS50-219ENST00000495039 ADGRG5Q8IZF4 528 aa5.45□□□□□ -1.54
VPS50-219ENST00000495039 B3GALNT2Q8NCR0 500 aa5.45□□□□□ -1.54
VPS50-219ENST00000495039 UBXN4Q92575 508 aa5.45□□□□□ -1.54
VPS50-219ENST00000495039 DNAJC28Q9NX36 388 aa5.45□□□□□ -1.54
VPS50-219ENST00000495039 DNM3Q9UQ16 869 aa5.45□□□□□ -1.54
VPS50-219ENST00000495039 WDR27A2RRH5 827 aa5.44□□□□□ -1.54
VPS50-219ENST00000495039 TOR1BO14657 336 aa5.44□□□□□ -1.54
VPS50-219ENST00000495039 AGFG2O95081 481 aa5.44□□□□□ -1.54
VPS50-219ENST00000495039 TTLL1O95922 423 aa5.44□□□□□ -1.54
VPS50-219ENST00000495039 CTXN1P60606 82 aa5.44□□□□□ -1.54
VPS50-219ENST00000495039 STRN3Q13033 797 aa5.44□□□□□ -1.54
VPS50-219ENST00000495039 KLF9Q13886 244 aaPredicted RBP5.44□□□□□ -1.54
VPS50-219ENST00000495039 HLXQ14774 488 aaPredicted RBP5.44□□□□□ -1.54
VPS50-219ENST00000495039 ZNF782Q6ZMW2 699 aaPredicted RBP5.44□□□□□ -1.54
VPS50-219ENST00000495039 OR2I1PQ8NGU4 316 aa5.44□□□□□ -1.54
VPS50-219ENST00000495039 C7orf25Q9BPX7 421 aa5.44□□□□□ -1.54
VPS50-219ENST00000495039 KLC4Q9NSK0 619 aa5.44□□□□□ -1.54
VPS50-219ENST00000495039 MRPL42Q9Y6G3 142 aaKnown RBP5.44□□□□□ -1.54
VPS50-219ENST00000495039 CCDC195A0A1B0GUA6 201 aa5.43□□□□□ -1.54
VPS50-219ENST00000495039 TRIM38O00635 465 aa5.43□□□□□ -1.54
VPS50-219ENST00000495039 SUN1O94901 812 aa5.43□□□□□ -1.54
VPS50-219ENST00000495039 MTHFD1P11586 935 aaKnown RBP5.43□□□□□ -1.54
VPS50-219ENST00000495039 SLC6A4P31645 630 aa5.43□□□□□ -1.54
VPS50-219ENST00000495039 KRTAP10-7P60409 375 aaPredicted RBP5.43□□□□□ -1.54
VPS50-219ENST00000495039 FAPQ12884 760 aa5.43□□□□□ -1.54
VPS50-219ENST00000495039 ETFDHQ16134 617 aa5.43□□□□□ -1.54
VPS50-219ENST00000495039 TMEM119Q4V9L6 283 aa5.43□□□□□ -1.54
VPS50-219ENST00000495039 UTP14CQ5TAP6 766 aaKnown RBP5.43□□□□□ -1.54
VPS50-219ENST00000495039 MORN5Q5VZ52 161 aa5.43□□□□□ -1.54
VPS50-219ENST00000495039 RNF180Q86T96 592 aa5.43□□□□□ -1.54
VPS50-219ENST00000495039 PBKQ96KB5 322 aa5.43□□□□□ -1.54
VPS50-219ENST00000495039 ZNF48Q96MX3 618 aaPredicted RBP5.43□□□□□ -1.54
VPS50-219ENST00000495039 BTBD3Q9Y2F9 522 aa5.43□□□□□ -1.54
VPS50-219ENST00000495039 ZNF521Q96K83 1311 aa5.43□□□□□ -1.54
VPS50-219ENST00000495039 OSMP13725 252 aa5.42□□□□□ -1.54
VPS50-219ENST00000495039 POU3F3P20264 500 aaPredicted RBP5.42□□□□□ -1.54
VPS50-219ENST00000495039 EPHB2P29323 1055 aa5.42□□□□□ -1.54
VPS50-219ENST00000495039 MTNR1BP49286 362 aa5.42□□□□□ -1.54
VPS50-219ENST00000495039 CCT4P50991 539 aaKnown RBP5.42□□□□□ -1.54
VPS50-219ENST00000495039 PIGFQ07326 219 aa5.42□□□□□ -1.54
VPS50-219ENST00000495039 GPR162Q16538 588 aa5.42□□□□□ -1.54
VPS50-219ENST00000495039 NEK8Q86SG6 692 aa5.42□□□□□ -1.54
VPS50-219ENST00000495039 DCBLD1Q8N8Z6 715 aa5.42□□□□□ -1.54
VPS50-219ENST00000495039 DRC1Q96MC2 740 aa5.42□□□□□ -1.54
VPS50-219ENST00000495039 BHMT2Q9H2M3 363 aa5.42□□□□□ -1.54
VPS50-219ENST00000495039 CCM2LQ9NUG4 571 aaPredicted RBP5.42□□□□□ -1.54
VPS50-219ENST00000495039 VSX1Q9NZR4 365 aaPredicted RBP5.42□□□□□ -1.54
VPS50-219ENST00000495039 TBC1D30Q9Y2I9 924 aa5.42□□□□□ -1.54
VPS50-219ENST00000495039 VWC2LB2RUY7 222 aa5.41□□□□□ -1.54
VPS50-219ENST00000495039 GRM6O15303 877 aa5.41□□□□□ -1.54
VPS50-219ENST00000495039 BRINP1O60477 761 aa5.41□□□□□ -1.54
VPS50-219ENST00000495039 MOSPD3O75425 235 aa5.41□□□□□ -1.54
VPS50-219ENST00000495039 LATS1O95835 1130 aa5.41□□□□□ -1.54
VPS50-219ENST00000495039 DRD4P21917 467 aa5.41□□□□□ -1.54
VPS50-219ENST00000495039 CERS1P27544 350 aa5.41□□□□□ -1.54
VPS50-219ENST00000495039 GPR3P46089 330 aa5.41□□□□□ -1.54
VPS50-219ENST00000495039 MC2RQ01718 297 aa5.41□□□□□ -1.54
VPS50-219ENST00000495039 PABPC1LQ4VXU2 614 aaKnown RBP5.41□□□□□ -1.54
VPS50-219ENST00000495039 SLC44A4Q53GD3 710 aa5.41□□□□□ -1.54
VPS50-219ENST00000495039 TAF7LQ5H9L4 462 aa5.41□□□□□ -1.54
VPS50-219ENST00000495039 SLC9A4Q6AI14 798 aa5.41□□□□□ -1.54
VPS50-219ENST00000495039 CAMKK1Q8N5S9 505 aa5.41□□□□□ -1.54
VPS50-219ENST00000495039 KLHL32Q96NJ5 620 aa5.41□□□□□ -1.54
VPS50-219ENST00000495039 ALG8Q9BVK2 526 aa5.41□□□□□ -1.54
VPS50-219ENST00000495039 VTA1Q9NP79 307 aa5.41□□□□□ -1.54
VPS50-219ENST00000495039 C14orf119Q9NWQ9 140 aa5.41□□□□□ -1.54
VPS50-219ENST00000495039 NR2E3Q9Y5X4 410 aa5.41□□□□□ -1.54
VPS50-219ENST00000495039 TARM1B6A8C7 271 aa5.4□□□□□ -1.54
VPS50-219ENST00000495039 E7ENX8 843 aa5.4□□□□□ -1.54
VPS50-219ENST00000495039 HNRNPCP07910 306 aaKnown RBP eCLIP5.4□□□□□ -1.54
VPS50-219ENST00000495039 CCT8P50990 548 aa5.4□□□□□ -1.54
VPS50-219ENST00000495039 HNRNPMP52272 730 aaKnown RBP eCLIP5.4□□□□□ -1.54
VPS50-219ENST00000495039 TAP2Q03519 686 aa5.4□□□□□ -1.54
VPS50-219ENST00000495039 RHOT1Q8IXI2 618 aa5.4□□□□□ -1.54
VPS50-219ENST00000495039 CFAP52Q8N1V2 620 aa5.4□□□□□ -1.54
VPS50-219ENST00000495039 DENND1AQ8TEH3 1009 aa5.4□□□□□ -1.54
VPS50-219ENST00000495039 WASF1Q92558 559 aa5.4□□□□□ -1.54
VPS50-219ENST00000495039 PACSIN1Q9BY11 444 aa5.4□□□□□ -1.54
VPS50-219ENST00000495039 JKAMPQ9P055 326 aa5.4□□□□□ -1.54
VPS50-219ENST00000495039 ADGRA2Q96PE1 1338 aa5.4□□□□□ -1.55
VPS50-219ENST00000495039 CD1AP06126 327 aa5.39□□□□□ -1.55
VPS50-219ENST00000495039 NPTX2P47972 431 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms