RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 C9orf72Q96LT7 481 aa20.1■□□□□ 0.81
COL27A1-207ENST00000494090 FOPNLQ96NB1 174 aa20.1■□□□□ 0.81
COL27A1-207ENST00000494090 YIPF3Q9GZM5 350 aa20.1■□□□□ 0.81
COL27A1-207ENST00000494090 NEUROG2Q9H2A3 272 aa20.1■□□□□ 0.81
COL27A1-207ENST00000494090 RANBP17Q9H2T7 1088 aaKnown RBP20.1■□□□□ 0.81
COL27A1-207ENST00000494090 ALG13Q9NP73 1137 aaKnown RBP20.1■□□□□ 0.81
COL27A1-207ENST00000494090 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.1■□□□□ 0.81
COL27A1-207ENST00000494090 PDGFRAP16234 1089 aa20.1■□□□□ 0.81
COL27A1-207ENST00000494090 KCNA2P16389 499 aa20.1■□□□□ 0.81
COL27A1-207ENST00000494090 RPS12P25398 132 aaKnown RBP20.1■□□□□ 0.81
COL27A1-207ENST00000494090 RDM1Q8NG50 284 aa20.1■□□□□ 0.81
COL27A1-207ENST00000494090 TMEM106CQ9BVX2 250 aa20.1■□□□□ 0.81
COL27A1-207ENST00000494090 OSBPL8Q9BZF1 889 aa20.1■□□□□ 0.81
COL27A1-207ENST00000494090 CASS4Q9NQ75 786 aa20.1■□□□□ 0.81
COL27A1-207ENST00000494090 ZNF70Q9UC06 446 aaPredicted RBP20.1■□□□□ 0.81
COL27A1-207ENST00000494090 SPATA31A6Q5VVP1 1343 aa20.1■□□□□ 0.81
COL27A1-207ENST00000494090 ZC3H4Q9UPT8 1303 aaKnown RBP20.1■□□□□ 0.81
COL27A1-207ENST00000494090 KIAA1210Q9ULL0 1709 aa20.1■□□□□ 0.81
COL27A1-207ENST00000494090 FAM95CA0A1B0GW59 222 aa20.09■□□□□ 0.81
COL27A1-207ENST00000494090 TADA2AO75478 443 aa20.09■□□□□ 0.81
COL27A1-207ENST00000494090 SERPINB9P50453 376 aa20.09■□□□□ 0.81
COL27A1-207ENST00000494090 DCP1BQ8IZD4 617 aaKnown RBP20.09■□□□□ 0.81
COL27A1-207ENST00000494090 MARCH10Q8NA82 808 aaPredicted RBP20.09■□□□□ 0.81
COL27A1-207ENST00000494090 MCEEQ96PE7 176 aa20.09■□□□□ 0.81
COL27A1-207ENST00000494090 HACL1Q9UJ83 578 aa20.09■□□□□ 0.81
COL27A1-207ENST00000494090 ERVK-24P63145 666 aa20.09■□□□□ 0.81
COL27A1-207ENST00000494090 ITM2BQ9Y287 266 aa20.09■□□□□ 0.81
COL27A1-207ENST00000494090 SNX9Q9Y5X1 595 aa20.09■□□□□ 0.81
COL27A1-207ENST00000494090 GOLGA8RI6L899 631 aa20.09■□□□□ 0.81
COL27A1-207ENST00000494090 CUL3Q13618 768 aa20.09■□□□□ 0.81
COL27A1-207ENST00000494090 RIBC1Q8N443 379 aaPredicted RBP20.09■□□□□ 0.81
COL27A1-207ENST00000494090 PCSK1P29120 753 aa20.09■□□□□ 0.81
COL27A1-207ENST00000494090 CATSPER3Q86XQ3 398 aa20.09■□□□□ 0.81
COL27A1-207ENST00000494090 PRMT7Q9NVM4 692 aaPredicted RBP20.09■□□□□ 0.81
COL27A1-207ENST00000494090 ZC3H7BQ9UGR2 993 aaKnown RBP20.09■□□□□ 0.81
COL27A1-207ENST00000494090 XPO7Q9UIA9 1087 aaKnown RBP20.09■□□□□ 0.81
COL27A1-207ENST00000494090 SPAG6O75602 509 aa20.08■□□□□ 0.81
COL27A1-207ENST00000494090 EMC2Q15006 297 aa20.08■□□□□ 0.81
COL27A1-207ENST00000494090 RBBP7Q16576 425 aa20.08■□□□□ 0.81
COL27A1-207ENST00000494090 RARS2Q5T160 578 aaKnown RBP20.08■□□□□ 0.81
COL27A1-207ENST00000494090 PATL1Q86TB9 770 aaKnown RBP20.08■□□□□ 0.81
COL27A1-207ENST00000494090 NAF1Q96HR8 494 aaKnown RBP20.08■□□□□ 0.81
COL27A1-207ENST00000494090 SH2D3AQ9BRG2 576 aa20.08■□□□□ 0.81
COL27A1-207ENST00000494090 KIF17Q9P2E2 1029 aa20.08■□□□□ 0.81
COL27A1-207ENST00000494090 HIST1H2AGP0C0S8 130 aaPredicted RBP20.08■□□□□ 0.81
COL27A1-207ENST00000494090 HIST1H2ADP20671 130 aa20.08■□□□□ 0.81
COL27A1-207ENST00000494090 SV2CQ496J9 727 aa20.08■□□□□ 0.81
COL27A1-207ENST00000494090 HIST1H2AHQ96KK5 128 aa20.08■□□□□ 0.81
COL27A1-207ENST00000494090 HIST1H2AJQ99878 128 aa20.08■□□□□ 0.81
COL27A1-207ENST00000494090 H2AFJQ9BTM1 129 aa20.08■□□□□ 0.81
COL27A1-207ENST00000494090 FUCA2Q9BTY2 467 aa20.08■□□□□ 0.81
COL27A1-207ENST00000494090 FBXW4P57775 412 aa20.08■□□□□ 0.8
COL27A1-207ENST00000494090 PPP4CP60510 307 aa20.08■□□□□ 0.8
COL27A1-207ENST00000494090 ARL8AQ96BM9 186 aa20.08■□□□□ 0.8
COL27A1-207ENST00000494090 NSMCE4AQ9NXX6 385 aa20.08■□□□□ 0.8
COL27A1-207ENST00000494090 GGT7Q9UJ14 662 aa20.08■□□□□ 0.8
COL27A1-207ENST00000494090 CD44P16070 742 aaKnown RBP20.08■□□□□ 0.8
COL27A1-207ENST00000494090 ZNF200P98182 395 aaPredicted RBP20.08■□□□□ 0.8
COL27A1-207ENST00000494090 WDR93Q6P2C0 686 aa20.08■□□□□ 0.8
COL27A1-207ENST00000494090 CYFIP2Q96F07 1278 aa20.08■□□□□ 0.8
COL27A1-207ENST00000494090 HLA-DRAP01903 254 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 SESN2P58004 480 aaPredicted RBP20.07■□□□□ 0.8
COL27A1-207ENST00000494090 DYNC1I2Q13409 638 aaKnown RBP20.07■□□□□ 0.8
COL27A1-207ENST00000494090 TMEM259Q4ZIN3 620 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 STKLD1Q8NE28 680 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 CATSPER1Q8NEC5 780 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 RRN3P2A6NIE6 340 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 ATP9BO43861 1147 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 MAGEA4P43358 317 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 RRM2BQ7LG56 351 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 TRPM8Q7Z2W7 1104 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 MFN1Q8IWA4 741 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 DDIASQ8IXT1 998 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 CEP70Q8NHQ1 597 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 CARD9Q9H257 536 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 RAB6BQ9NRW1 208 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 DYNC1LI2O43237 492 aaPredicted RBP20.07■□□□□ 0.8
COL27A1-207ENST00000494090 FAM107AO95990 144 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 STYK1Q6J9G0 422 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 TPCN2Q8NHX9 752 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 MOV10L1Q9BXT6 1211 aaKnown RBP20.07■□□□□ 0.8
COL27A1-207ENST00000494090 CELF4Q9BZC1 486 aaKnown RBP20.07■□□□□ 0.8
COL27A1-207ENST00000494090 ARHGAP10A1A4S6 786 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 APRTP07741 180 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 PRLRP16471 622 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 GRB10Q13322 594 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 DNAL1Q4LDG9 190 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 C4orf22Q6V702 233 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 DDX42Q86XP3 938 aaKnown RBP eCLIP20.07■□□□□ 0.8
COL27A1-207ENST00000494090 ATPAF2Q8N5M1 289 aa20.07■□□□□ 0.8
COL27A1-207ENST00000494090 ALDH18A1P54886 795 aaKnown RBP20.06■□□□□ 0.8
COL27A1-207ENST00000494090 STX3Q13277 289 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 FIGNQ5HY92 759 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 SCFD2Q8WU76 684 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 NPHS2Q9NP85 383 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 ANKEF1Q9NU02 776 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 HBP1O60381 514 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 CHRNA5P30532 468 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 COILP38432 576 aaPredicted RBP20.06■□□□□ 0.8
COL27A1-207ENST00000494090 ITGA8P53708 1063 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms