RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 WDR72Q3MJ13 1102 aa14.91□□□□□ -0.02
C9orf3-221ENST00000489562 SPECC1LQ69YQ0 1117 aa14.91□□□□□ -0.02
C9orf3-221ENST00000489562 KCNT2Q6UVM3 1135 aa14.91□□□□□ -0.02
C9orf3-221ENST00000489562 ENOSF1Q7L5Y1 443 aa14.91□□□□□ -0.02
C9orf3-221ENST00000489562 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.91□□□□□ -0.02
C9orf3-221ENST00000489562 COLGALT1Q8NBJ5 622 aa14.91□□□□□ -0.02
C9orf3-221ENST00000489562 NEK11Q8NG66 645 aa14.91□□□□□ -0.02
C9orf3-221ENST00000489562 ANP32BQ92688 251 aaKnown RBP14.91□□□□□ -0.02
C9orf3-221ENST00000489562 JAKMIP2Q96AA8 810 aa14.91□□□□□ -0.02
C9orf3-221ENST00000489562 PAAF1Q9BRP4 392 aa14.91□□□□□ -0.02
C9orf3-221ENST00000489562 LSM14BQ9BX40 385 aaKnown RBP14.91□□□□□ -0.02
C9orf3-221ENST00000489562 NIF3L1Q9GZT8 377 aa14.91□□□□□ -0.02
C9orf3-221ENST00000489562 PRO3102Q9H379 93 aa14.91□□□□□ -0.02
C9orf3-221ENST00000489562 APEX2Q9UBZ4 518 aa14.91□□□□□ -0.02
C9orf3-221ENST00000489562 ADAM28Q9UKQ2 775 aa14.91□□□□□ -0.02
C9orf3-221ENST00000489562 PRG3Q9Y2Y8 225 aaPredicted RBP14.91□□□□□ -0.02
C9orf3-221ENST00000489562 PCDHB12Q9Y5F1 795 aa14.91□□□□□ -0.02
C9orf3-221ENST00000489562 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.91□□□□□ -0.02
C9orf3-221ENST00000489562 VWA8A3KMH1 1905 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 PPEF2O14830 753 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 TADA2AO75478 443 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 ADCY5O95622 1261 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 FAM163BP0C2L3 166 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 TRIM21P19474 475 aaKnown RBP14.9□□□□□ -0.02
C9orf3-221ENST00000489562 CDC25BP30305 580 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 YWHAEP62258 255 aaKnown RBP14.9□□□□□ -0.02
C9orf3-221ENST00000489562 FIGNQ5HY92 759 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 KLHDC7AQ5VTJ3 777 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 CHRDL2Q6WN34 429 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 DPH6Q7L8W6 267 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 VSTM4Q8IW00 320 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 TTC39CQ8N584 583 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 C3orf58Q8NDZ4 430 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 SPATA18Q8TC71 538 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 SAMD11Q96NU1 681 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 PI4K2AQ9BTU6 479 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 PLVAPQ9BX97 442 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 EDEM3Q9BZQ6 932 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 CYP3A43Q9HB55 503 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 APOBEC3GQ9HC16 384 aaKnown RBP14.9□□□□□ -0.02
C9orf3-221ENST00000489562 SIX2Q9NPC8 291 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 FAM207AQ9NSI2 230 aaPredicted RBP14.9□□□□□ -0.02
C9orf3-221ENST00000489562 SPG21Q9NZD8 308 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 HCSTQ9UBK5 93 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 CACNG4Q9UBN1 327 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 MSRAQ9UJ68 235 aa14.9□□□□□ -0.02
C9orf3-221ENST00000489562 SF3B1O75533 1304 aaKnown RBP eCLIP14.9□□□□□ -0.02
C9orf3-221ENST00000489562 LINC01553A4QN01 128 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 M0QZQ0 153 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 HUS1O60921 280 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 ODC1P11926 461 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 UCHL3P15374 230 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 RABGGTBP53611 331 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 MFAP3P55082 362 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 DSTYKQ6XUX3 929 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 SLC39A11Q8N1S5 342 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 TMEM130Q8N3G9 435 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 PPM1KQ8N3J5 372 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 TOP6BLQ8N6T0 577 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 TMEM169Q96HH4 297 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 IGSF21Q96ID5 467 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 SUSD3Q96L08 255 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 BCO2Q9BYV7 579 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 GANQ9H2C0 597 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 MARCH5Q9NX47 278 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 CEP72Q9P209 647 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 NXF1Q9UBU9 619 aaKnown RBP14.89□□□□□ -0.03
C9orf3-221ENST00000489562 DSEQ9UL01 958 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 SNX9Q9Y5X1 595 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 PLXNA4Q9HCM2 1894 aa14.89□□□□□ -0.03
C9orf3-221ENST00000489562 GRXCR1A8MXD5 290 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 SPTLC1O15269 473 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 LRRN2O75325 713 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 TPM1P09493 284 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 LINC00271P0C7V0 271 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 ASPAP45381 313 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 LRMPQ12912 555 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 CUL2Q13617 745 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 TIGD5Q53EQ6 642 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 SCARA3Q6AZY7 606 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 FAM109BQ6ICB4 259 aaPredicted RBP14.88□□□□□ -0.03
C9orf3-221ENST00000489562 SPOPLQ6IQ16 392 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 PHLDB3Q6NSJ2 640 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 DPY19L2P1Q6NXN4 242 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 CD300LGQ6UXG3 332 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 FMNL3Q8IVF7 1028 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 TMEM86AQ8N2M4 240 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 APPL2Q8NEU8 664 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 RABGGTAQ92696 567 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 TATDN2Q93075 761 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 SENP8Q96LD8 212 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 MMS19Q96T76 1030 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 DNAI2Q9GZS0 605 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 UBE2TQ9NPD8 197 aaPredicted RBP14.88□□□□□ -0.03
C9orf3-221ENST00000489562 PCDHB8Q9UN66 801 aa14.88□□□□□ -0.03
C9orf3-221ENST00000489562 A0A1W2PQJ5 194 aa14.87□□□□□ -0.03
C9orf3-221ENST00000489562 LCHNA4D1U4 455 aa14.87□□□□□ -0.03
C9orf3-221ENST00000489562 C5orf67F2Z3F1 127 aa14.87□□□□□ -0.03
C9orf3-221ENST00000489562 CYB561D2O14569 222 aa14.87□□□□□ -0.03
C9orf3-221ENST00000489562 SYN3O14994 580 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms