RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 RUNX3Q13761 415 aa12.75□□□□□ -0.37
HDAC6-233ENST00000489352 TFDP1Q14186 410 aa12.75□□□□□ -0.37
HDAC6-233ENST00000489352 TYW1BQ6NUM6 668 aa12.75□□□□□ -0.37
HDAC6-233ENST00000489352 TMTC3Q6ZXV5 915 aa12.75□□□□□ -0.37
HDAC6-233ENST00000489352 ANO5Q75V66 913 aa12.75□□□□□ -0.37
HDAC6-233ENST00000489352 GALNT15Q8N3T1 639 aa12.75□□□□□ -0.37
HDAC6-233ENST00000489352 FAM181AQ8N9Y4 354 aa12.75□□□□□ -0.37
HDAC6-233ENST00000489352 P2RY13Q9BPV8 354 aa12.75□□□□□ -0.37
HDAC6-233ENST00000489352 FSCN3Q9NQT6 498 aa12.75□□□□□ -0.37
HDAC6-233ENST00000489352 GKN1Q9NS71 199 aa12.75□□□□□ -0.37
HDAC6-233ENST00000489352 BMP2KQ9NSY1 1161 aaPredicted RBP12.75□□□□□ -0.37
HDAC6-233ENST00000489352 SLC12A7Q9Y666 1083 aa12.75□□□□□ -0.37
HDAC6-233ENST00000489352 COL12A1Q99715 3063 aa12.75□□□□□ -0.37
HDAC6-233ENST00000489352 MYO9AB2RTY4 2548 aa12.75□□□□□ -0.37
HDAC6-233ENST00000489352 TRIP11Q15643 1979 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 TSC2P49815 1807 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 KIAA1549LQ6ZVL6 1849 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 PYCARD-AS1I3L0S3 204 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 MSH4O15457 936 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 CYP21A2P08686 494 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 SERPINF2P08697 491 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 ITPKBP27987 946 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 HOXD12P35452 270 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 RFC5P40937 340 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 PTGER3P43115 390 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 MCM2P49736 904 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 GALK1P51570 392 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 PSMC5P62195 406 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 HNRNPUQ00839 825 aaKnown RBP eCLIP12.74□□□□□ -0.37
HDAC6-233ENST00000489352 CACNB1Q02641 598 aaPredicted RBP12.74□□□□□ -0.37
HDAC6-233ENST00000489352 MXD4Q14582 209 aaPredicted RBP12.74□□□□□ -0.37
HDAC6-233ENST00000489352 SYNE3Q6ZMZ3 975 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 TMPRSS7Q7RTY8 843 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 GPR155Q7Z3F1 870 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 FERMT3Q86UX7 667 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 CDR2LQ86X02 465 aaPredicted RBP12.74□□□□□ -0.37
HDAC6-233ENST00000489352 RAB11FIP4Q86YS3 637 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 NAXDQ8IW45 347 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 FANCBQ8NB91 859 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 LRRC3BQ96PB8 259 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 ATXN3LQ9H3M9 355 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 MAFFQ9ULX9 164 aa12.74□□□□□ -0.37
HDAC6-233ENST00000489352 PTPRDP23468 1912 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 I3L4J1 428 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 ARHGAP33O14559 1287 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 DKC1O60832 514 aaKnown RBP eCLIP12.73□□□□□ -0.37
HDAC6-233ENST00000489352 STBD1O95210 358 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 EPHB3P54753 998 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 NPEPPSP55786 919 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 ANTXR2P58335 489 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 PTENP60484 403 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 CYP4A11Q02928 519 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 PLD1Q13393 1074 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 BYSLQ13895 437 aaKnown RBP12.73□□□□□ -0.37
HDAC6-233ENST00000489352 TMEM132AQ24JP5 1023 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 SPDYCQ5MJ68 293 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 STXBP5Q5T5C0 1151 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 GPR158Q5T848 1215 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 PDCD7Q8N8D1 485 aaKnown RBP12.73□□□□□ -0.37
HDAC6-233ENST00000489352 CRYGNQ8WXF5 182 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 CNOT6LQ96LI5 555 aaKnown RBP12.73□□□□□ -0.37
HDAC6-233ENST00000489352 PNMA5Q96PV4 448 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 DNAAF2Q9NVR5 837 aaKnown RBP12.73□□□□□ -0.37
HDAC6-233ENST00000489352 BARHL2Q9NY43 387 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 KIAA1522Q9P206 1035 aaPredicted RBP12.73□□□□□ -0.37
HDAC6-233ENST00000489352 PILRBQ9UKJ0 227 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 PPME1Q9Y570 386 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 V9GY48 417 aaPredicted RBP12.73□□□□□ -0.37
HDAC6-233ENST00000489352 ATMQ13315 3056 aa12.73□□□□□ -0.37
HDAC6-233ENST00000489352 TMEM189-UBE2V1I3L0A0 370 aa12.72□□□□□ -0.37
HDAC6-233ENST00000489352 FGF19O95750 216 aa12.72□□□□□ -0.37
HDAC6-233ENST00000489352 CPB1P15086 417 aa12.72□□□□□ -0.37
HDAC6-233ENST00000489352 ITPKAP23677 461 aa12.72□□□□□ -0.37
HDAC6-233ENST00000489352 CLCNKBP51801 687 aa12.72□□□□□ -0.37
HDAC6-233ENST00000489352 CTXN3Q4LDR2 81 aa12.72□□□□□ -0.37
HDAC6-233ENST00000489352 C20orf194Q5TEA3 1177 aa12.72□□□□□ -0.37
HDAC6-233ENST00000489352 CC2D1AQ6P1N0 951 aaPredicted RBP12.72□□□□□ -0.37
HDAC6-233ENST00000489352 SLCO6A1Q86UG4 719 aa12.72□□□□□ -0.37
HDAC6-233ENST00000489352 REXO1Q8N1G1 1221 aaKnown RBP12.72□□□□□ -0.37
HDAC6-233ENST00000489352 OR2I1PQ8NGU4 316 aa12.72□□□□□ -0.37
HDAC6-233ENST00000489352 SETD7Q8WTS6 366 aaKnown RBP12.72□□□□□ -0.37
HDAC6-233ENST00000489352 RLN3Q8WXF3 142 aa12.72□□□□□ -0.37
HDAC6-233ENST00000489352 SLC5A5Q92911 643 aa12.72□□□□□ -0.37
HDAC6-233ENST00000489352 CCDC136Q96JN2 1154 aa12.72□□□□□ -0.37
HDAC6-233ENST00000489352 UROC1Q96N76 676 aa12.72□□□□□ -0.37
HDAC6-233ENST00000489352 EBF3Q9H4W6 596 aa12.72□□□□□ -0.37
HDAC6-233ENST00000489352 DHX33Q9H6R0 707 aaKnown RBP12.72□□□□□ -0.37
HDAC6-233ENST00000489352 C6orf50Q9HD87 102 aa12.72□□□□□ -0.37
HDAC6-233ENST00000489352 BCCIPQ9P287 314 aaKnown RBP eCLIP12.72□□□□□ -0.37
HDAC6-233ENST00000489352 AFF4Q9UHB7 1163 aaKnown RBP12.72□□□□□ -0.37
HDAC6-233ENST00000489352 PTPRQQ9UMZ3 2332 aa12.72□□□□□ -0.37
HDAC6-233ENST00000489352 MUC22E2RYF6 1773 aaPredicted RBP12.71□□□□□ -0.37
HDAC6-233ENST00000489352 PTGESO14684 152 aa12.71□□□□□ -0.37
HDAC6-233ENST00000489352 AP5Z1O43299 807 aa12.71□□□□□ -0.37
HDAC6-233ENST00000489352 PRC1O43663 620 aa12.71□□□□□ -0.37
HDAC6-233ENST00000489352 U2AF2P26368 475 aaKnown RBP eCLIP12.71□□□□□ -0.37
HDAC6-233ENST00000489352 CIITAP33076 1130 aa12.71□□□□□ -0.37
HDAC6-233ENST00000489352 BRCC3P46736 316 aa12.71□□□□□ -0.37
HDAC6-233ENST00000489352 ALDH1A3P47895 512 aa12.71□□□□□ -0.37
HDAC6-233ENST00000489352 RASSF3Q86WH2 238 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms