RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 VARS2Q5ST30 1063 aaKnown RBP12.77□□□□□ -0.37
HPS4-214ENST00000485842 TTI2Q6NXR4 508 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 PDXDC1Q6P996 788 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 INTS8Q75QN2 995 aaKnown RBP12.77□□□□□ -0.37
HPS4-214ENST00000485842 LRRC52Q8N7C0 313 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 APPL2Q8NEU8 664 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 VN1R2Q8NFZ6 395 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 LNX1Q8TBB1 728 aaPredicted RBP12.77□□□□□ -0.37
HPS4-214ENST00000485842 TMC2Q8TDI7 906 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 ZNF516Q92618 1163 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 HLA-CQ95604 372 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 PABPC5Q96DU9 382 aaKnown RBP12.77□□□□□ -0.37
HPS4-214ENST00000485842 SENP8Q96LD8 212 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 MKNK1Q9BUB5 465 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 MMRN2Q9H8L6 949 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.77□□□□□ -0.37
HPS4-214ENST00000485842 THEGQ9P2T0 379 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 SIX4Q9UIU6 781 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 BARX2Q9UMQ3 279 aaPredicted RBP12.77□□□□□ -0.37
HPS4-214ENST00000485842 PCDHB8Q9UN66 801 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 BRWD1Q9NSI6 2320 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 FSD2A1L4K1 749 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 SPDYE4A6NLX3 237 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 KPNA7A9QM74 516 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 H3BQ06 376 aaPredicted RBP12.76□□□□□ -0.37
HPS4-214ENST00000485842 H7C4K7 107 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 M0QZQ0 153 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 SLC16A3O15427 465 aaKnown RBP12.76□□□□□ -0.37
HPS4-214ENST00000485842 NCK2O43639 380 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 TBX10O75333 385 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 GLP2RO95838 553 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 SRGAP2BP0DMP2 458 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 EPCAMP16422 314 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 KCNA5P22460 613 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 AARSP49588 968 aaKnown RBP eCLIP12.76□□□□□ -0.37
HPS4-214ENST00000485842 NLRP12P59046 1061 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 ADAM15Q13444 863 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 TRPC3Q13507 836 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 CLUL1Q15846 466 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 CCDC40Q4G0X9 1142 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 CTXN3Q4LDR2 81 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 DCAF17Q5H9S7 520 aaPredicted RBP12.76□□□□□ -0.37
HPS4-214ENST00000485842 TCERG1LQ5VWI1 586 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 TDRD10Q5VZ19 366 aaKnown RBP12.76□□□□□ -0.37
HPS4-214ENST00000485842 ZNF280DQ6N043 979 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 CAVIN1Q6NZI2 390 aaKnown RBP12.76□□□□□ -0.37
HPS4-214ENST00000485842 ANKS3Q6ZW76 656 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 USP37Q86T82 979 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 PALB2Q86YC2 1186 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 ZC3H3Q8IXZ2 948 aaKnown RBP12.76□□□□□ -0.37
HPS4-214ENST00000485842 MLKLQ8NB16 471 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 CXorf38Q8TB03 319 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 HPDLQ96IR7 371 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 DUSP9Q99956 384 aaKnown RBP12.76□□□□□ -0.37
HPS4-214ENST00000485842 RXFP1Q9HBX9 757 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 TMEM63CQ9P1W3 806 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 MTRRQ9UBK8 725 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 COG5Q9UP83 839 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 HCFC2Q9Y5Z7 792 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 CDY1Q9Y6F8 540 aa12.76□□□□□ -0.37
HPS4-214ENST00000485842 CYB561D2O14569 222 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 ADAM12O43184 909 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 GLUD1P00367 558 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 PAX3P23760 479 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 OR1D2P34982 312 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 GCLMP48507 274 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 AP3M2P53677 418 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 ARPP19P56211 112 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 TFF2Q03403 129 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 DLX2Q07687 328 aaPredicted RBP12.75□□□□□ -0.37
HPS4-214ENST00000485842 MYO1EQ12965 1108 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 COL19A1Q14993 1142 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 C1orf220Q5T0J3 134 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 RBM43Q6ZSC3 357 aaKnown RBP12.75□□□□□ -0.37
HPS4-214ENST00000485842 PPFIBP1Q86W92 1011 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 GPR65Q8IYL9 337 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 SYAP1Q96A49 352 aaPredicted RBP12.75□□□□□ -0.37
HPS4-214ENST00000485842 CEP63Q96MT8 703 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 CLSTN3Q9BQT9 956 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 FNIP2Q9P278 1114 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 RWDD2AQ9UIY3 292 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 SNX9Q9Y5X1 595 aa12.75□□□□□ -0.37
HPS4-214ENST00000485842 ARHGEF37A1IGU5 675 aa12.74□□□□□ -0.37
HPS4-214ENST00000485842 HUS1O60921 280 aa12.74□□□□□ -0.37
HPS4-214ENST00000485842 CST3P01034 146 aaPredicted RBP12.74□□□□□ -0.37
HPS4-214ENST00000485842 C4BPAP04003 597 aaKnown RBP12.74□□□□□ -0.37
HPS4-214ENST00000485842 SPATA31D3P0C874 917 aa12.74□□□□□ -0.37
HPS4-214ENST00000485842 TYMPP19971 482 aa12.74□□□□□ -0.37
HPS4-214ENST00000485842 PTMSP20962 102 aa12.74□□□□□ -0.37
HPS4-214ENST00000485842 LTBRP36941 435 aa12.74□□□□□ -0.37
HPS4-214ENST00000485842 PIK3CAP42336 1068 aa12.74□□□□□ -0.37
HPS4-214ENST00000485842 CLCN4P51793 760 aa12.74□□□□□ -0.37
HPS4-214ENST00000485842 MYL6P60660 151 aa12.74□□□□□ -0.37
HPS4-214ENST00000485842 CLDN10P78369 228 aa12.74□□□□□ -0.37
HPS4-214ENST00000485842 YWHAHQ04917 246 aaPredicted RBP12.74□□□□□ -0.37
HPS4-214ENST00000485842 PPP3CAQ08209 521 aa12.74□□□□□ -0.37
HPS4-214ENST00000485842 TPD52L1Q16890 204 aaPredicted RBP12.74□□□□□ -0.37
HPS4-214ENST00000485842 CTC1Q2NKJ3 1217 aa12.74□□□□□ -0.37
HPS4-214ENST00000485842 WSCD1Q658N2 575 aa12.74□□□□□ -0.37
HPS4-214ENST00000485842 OVOS1Q6IE37 1185 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms