RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 CYP11A1P05108 521 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 TMEM191BP0C7N4 346 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 BMP1P13497 986 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 EPCAMP16422 314 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 RPL13P26373 211 aaKnown RBP17.16■□□□□ 0.34
UPF3A-208ENST00000484246 TAF6P49848 677 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 RAB33AQ14088 237 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 MORC3Q14149 939 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 DUOXA2Q1HG44 320 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 ELMSAN1Q6PJG2 1045 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 CEP57Q86XR8 500 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 CMASQ8NFW8 434 aaPredicted RBP17.16■□□□□ 0.34
UPF3A-208ENST00000484246 SUSD6Q92537 303 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 ERCC4Q92889 916 aaPredicted RBP17.16■□□□□ 0.34
UPF3A-208ENST00000484246 BORCS6Q96GS4 357 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 ANKRD36BP1Q96IX9 119 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 FNBP1Q96RU3 617 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 MKNK1Q9BUB5 465 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 S1PR5Q9H228 398 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 SIX4Q9UIU6 781 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 MAPK8IP1Q9UQF2 711 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 FAM50BQ9Y247 325 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 PRUNE2Q8WUY3 3088 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 SPTBN5Q9NRC6 3674 aaKnown RBP17.16■□□□□ 0.34
UPF3A-208ENST00000484246 H7C4K7 107 aa17.15■□□□□ 0.34
UPF3A-208ENST00000484246 MBTPS2O43462 519 aa17.15■□□□□ 0.34
UPF3A-208ENST00000484246 NR2F2P24468 414 aa17.15■□□□□ 0.34
UPF3A-208ENST00000484246 POLR2BP30876 1174 aaKnown RBP17.15■□□□□ 0.34
UPF3A-208ENST00000484246 KCNQ1P51787 676 aa17.15■□□□□ 0.34
UPF3A-208ENST00000484246 AP3M2P53677 418 aa17.15■□□□□ 0.34
UPF3A-208ENST00000484246 LRRC63Q05C16 580 aa17.15■□□□□ 0.34
UPF3A-208ENST00000484246 SMAD2Q15796 467 aaKnown RBP17.15■□□□□ 0.34
UPF3A-208ENST00000484246 SV2CQ496J9 727 aa17.15■□□□□ 0.34
UPF3A-208ENST00000484246 ZNF280DQ6N043 979 aa17.15■□□□□ 0.34
UPF3A-208ENST00000484246 RTL10Q7L3V2 364 aa17.15■□□□□ 0.34
UPF3A-208ENST00000484246 SPDYE1Q8NFV5 336 aaPredicted RBP17.15■□□□□ 0.34
UPF3A-208ENST00000484246 OR5B17Q8NGF7 314 aa17.15■□□□□ 0.34
UPF3A-208ENST00000484246 TMC2Q8TDI7 906 aa17.15■□□□□ 0.34
UPF3A-208ENST00000484246 PARD3BQ8TEW8 1205 aa17.15■□□□□ 0.34
UPF3A-208ENST00000484246 NOC3LQ8WTT2 800 aaKnown RBP17.15■□□□□ 0.34
UPF3A-208ENST00000484246 CLSTN2Q9H4D0 955 aa17.15■□□□□ 0.34
UPF3A-208ENST00000484246 PLEKHA4Q9H4M7 779 aa17.15■□□□□ 0.34
UPF3A-208ENST00000484246 SFXN1Q9H9B4 322 aa17.15■□□□□ 0.34
UPF3A-208ENST00000484246 KIAA1468Q9P260 1216 aa17.15■□□□□ 0.34
UPF3A-208ENST00000484246 FBXW11Q9UKB1 542 aa17.15■□□□□ 0.34
UPF3A-208ENST00000484246 REV3LO60673 3130 aa17.15■□□□□ 0.34
UPF3A-208ENST00000484246 PSMA7O14818 248 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 ADAM12O43184 909 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 TNNC2P02585 160 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 ITGB3P05106 788 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 ODC1P11926 461 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 BMP6P22004 513 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 CASP4P49662 377 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 RBP5P82980 135 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 ITIH3Q06033 890 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 STIM1Q13586 685 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 PTCRAQ6ISU1 281 aaPredicted RBP17.14■□□□□ 0.33
UPF3A-208ENST00000484246 LLGL2Q6P1M3 1020 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 CYP26C1Q6V0L0 522 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 EP400NLQ6ZTU2 488 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 RDH13Q8NBN7 331 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 SPATA18Q8TC71 538 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 PLEKHO2Q8TD55 490 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 DHTKD1Q96HY7 919 aaPredicted RBP17.14■□□□□ 0.33
UPF3A-208ENST00000484246 SENP8Q96LD8 212 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 GDAP2Q9NXN4 497 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 DSEQ9UL01 958 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 FRMD4BQ9Y2L6 1034 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 ANK1P16157 1881 aa17.14■□□□□ 0.33
UPF3A-208ENST00000484246 BRWD1Q9NSI6 2320 aa17.13■□□□□ 0.33
UPF3A-208ENST00000484246 GOLGA6L22H0YM25 854 aa17.13■□□□□ 0.33
UPF3A-208ENST00000484246 TGM5O43548 720 aa17.13■□□□□ 0.33
UPF3A-208ENST00000484246 AKAP3O75969 853 aa17.13■□□□□ 0.33
UPF3A-208ENST00000484246 STAU1O95793 577 aaKnown RBP17.13■□□□□ 0.33
UPF3A-208ENST00000484246 POU2F2P09086 479 aa17.13■□□□□ 0.33
UPF3A-208ENST00000484246 DLATP10515 647 aaKnown RBP17.13■□□□□ 0.33
UPF3A-208ENST00000484246 RPL17P18621 184 aaKnown RBP17.13■□□□□ 0.33
UPF3A-208ENST00000484246 CCNE1P24864 410 aa17.13■□□□□ 0.33
UPF3A-208ENST00000484246 HOXA9P31269 272 aa17.13■□□□□ 0.33
UPF3A-208ENST00000484246 YWHAHQ04917 246 aaPredicted RBP17.13■□□□□ 0.33
UPF3A-208ENST00000484246 RSPO2Q6UXX9 243 aaPredicted RBP17.13■□□□□ 0.33
UPF3A-208ENST00000484246 DSTYKQ6XUX3 929 aa17.13■□□□□ 0.33
UPF3A-208ENST00000484246 INTS8Q75QN2 995 aaKnown RBP17.13■□□□□ 0.33
UPF3A-208ENST00000484246 TRAPPC11Q7Z392 1133 aa17.13■□□□□ 0.33
UPF3A-208ENST00000484246 USP37Q86T82 979 aa17.13■□□□□ 0.33
UPF3A-208ENST00000484246 CCDC127Q96BQ5 260 aa17.13■□□□□ 0.33
UPF3A-208ENST00000484246 TSG101Q99816 390 aa17.13■□□□□ 0.33
UPF3A-208ENST00000484246 ADAM7Q9H2U9 754 aa17.13■□□□□ 0.33
UPF3A-208ENST00000484246 MAN1C1Q9NR34 630 aa17.13■□□□□ 0.33
UPF3A-208ENST00000484246 FBXL5Q9UKA1 691 aa17.13■□□□□ 0.33
UPF3A-208ENST00000484246 MAFFQ9ULX9 164 aa17.13■□□□□ 0.33
UPF3A-208ENST00000484246 AGAP1Q9UPQ3 857 aa17.13■□□□□ 0.33
UPF3A-208ENST00000484246 OR6C75A6NL08 312 aa17.12■□□□□ 0.33
UPF3A-208ENST00000484246 LRRIQ3A6PVS8 624 aaPredicted RBP17.12■□□□□ 0.33
UPF3A-208ENST00000484246 KPNA7A9QM74 516 aa17.12■□□□□ 0.33
UPF3A-208ENST00000484246 IKBKBO14920 756 aa17.12■□□□□ 0.33
UPF3A-208ENST00000484246 TNNI1P19237 187 aa17.12■□□□□ 0.33
UPF3A-208ENST00000484246 PSMC2P35998 433 aaKnown RBP17.12■□□□□ 0.33
UPF3A-208ENST00000484246 ROR1Q01973 937 aa17.12■□□□□ 0.33
UPF3A-208ENST00000484246 CEP135Q66GS9 1140 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms