RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 SCARA5Q6ZMJ2 495 aa14.08□□□□□ -0.16
CHD3-210ENST00000479080 SPRED2Q7Z698 418 aa14.08□□□□□ -0.16
CHD3-210ENST00000479080 HERC6Q8IVU3 1022 aa14.08□□□□□ -0.16
CHD3-210ENST00000479080 LRRC43Q8N309 656 aa14.08□□□□□ -0.16
CHD3-210ENST00000479080 NEK11Q8NG66 645 aa14.08□□□□□ -0.16
CHD3-210ENST00000479080 SP7Q8TDD2 431 aaPredicted RBP14.08□□□□□ -0.16
CHD3-210ENST00000479080 HASPINQ8TF76 798 aa14.08□□□□□ -0.16
CHD3-210ENST00000479080 CPLX3Q8WVH0 158 aa14.08□□□□□ -0.16
CHD3-210ENST00000479080 HPDLQ96IR7 371 aa14.08□□□□□ -0.16
CHD3-210ENST00000479080 NIF3L1Q9GZT8 377 aa14.08□□□□□ -0.16
CHD3-210ENST00000479080 CEP72Q9P209 647 aa14.08□□□□□ -0.16
CHD3-210ENST00000479080 CAPN11Q9UMQ6 739 aa14.08□□□□□ -0.16
CHD3-210ENST00000479080 TSC2P49815 1807 aa14.08□□□□□ -0.16
CHD3-210ENST00000479080 KIAA1671Q9BY89 1806 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 GRXCR1A8MXD5 290 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 I3L4J1 428 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 NRP1O14786 923 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 HCRTO43612 131 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 CALCAP01258 141 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 GALTP07902 379 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 RPL9P32969 192 aaKnown RBP14.07□□□□□ -0.16
CHD3-210ENST00000479080 TAF6P49848 677 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 CDH8P55286 799 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 LILRA4P59901 499 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 GCNT1Q02742 428 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 CUL2Q13617 745 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 TIGD5Q53EQ6 642 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 OSTM1Q86WC4 334 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 CMTR2Q8IYT2 770 aaKnown RBP14.07□□□□□ -0.16
CHD3-210ENST00000479080 ABI1Q8IZP0 508 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 PPM1KQ8N3J5 372 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 KBTBD7Q8WVZ9 684 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 SHC3Q92529 594 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 TAF4BQ92750 862 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 PCMTD1Q96MG8 357 aaPredicted RBP14.07□□□□□ -0.16
CHD3-210ENST00000479080 SLC9A7Q96T83 725 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 VN1R3Q9BXE9 311 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 MRPL9Q9BYD2 267 aaKnown RBP14.07□□□□□ -0.16
CHD3-210ENST00000479080 UBE2TQ9NPD8 197 aaPredicted RBP14.07□□□□□ -0.16
CHD3-210ENST00000479080 KANSL3Q9P2N6 904 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 HMGXB4Q9UGU5 601 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 L1RE1Q9UN81 338 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 PRG3Q9Y2Y8 225 aaPredicted RBP14.07□□□□□ -0.16
CHD3-210ENST00000479080 SLC4A7Q9Y6M7 1214 aa14.07□□□□□ -0.16
CHD3-210ENST00000479080 LRRC53A6NM62 1247 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 NT5C1B-RDH14C9J2C7 533 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 F8VZ95 297 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 TMEM189-UBE2V1I3L0A0 370 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 TRIM21P19474 475 aaKnown RBP14.06□□□□□ -0.16
CHD3-210ENST00000479080 RABGGTBP53611 331 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 ADKP55263 362 aaKnown RBP14.06□□□□□ -0.16
CHD3-210ENST00000479080 CETN1Q12798 172 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 DRAP1Q14919 205 aaPredicted RBP14.06□□□□□ -0.16
CHD3-210ENST00000479080 ARHGAP44Q17R89 818 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 SOWAHAQ2M3V2 549 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 WDR72Q3MJ13 1102 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 ZNF667Q5HYK9 610 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 CCDC186Q7Z3E2 898 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 TMEM139Q8IV31 216 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 PHOSPHO2Q8TCD6 241 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 WHAMMQ8TF30 809 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 ZNF560Q96MR9 790 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 UROC1Q96N76 676 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 TWNKQ96RR1 684 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 DNAJC7Q99615 494 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 MRPL45Q9BRJ2 306 aaKnown RBP14.06□□□□□ -0.16
CHD3-210ENST00000479080 TMEM175Q9BSA9 504 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 EDEM3Q9BZQ6 932 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 PRO3102Q9H379 93 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 GDAP2Q9NXN4 497 aa14.06□□□□□ -0.16
CHD3-210ENST00000479080 NXF1Q9UBU9 619 aaKnown RBP14.06□□□□□ -0.16
CHD3-210ENST00000479080 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.06□□□□□ -0.163e-7■■■■■ 28.7
CHD3-210ENST00000479080 KPNA7A9QM74 516 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 FOXN3O00409 490 aaPredicted RBP14.05□□□□□ -0.16
CHD3-210ENST00000479080 WEE2P0C1S8 567 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 MYOGP15173 224 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 ATP2A2P16615 1042 aaKnown RBP14.05□□□□□ -0.16
CHD3-210ENST00000479080 FECHP22830 423 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 OR1G1P47890 313 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 ZNF132P52740 706 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 BCAR1P56945 870 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 ZBED6P86452 979 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 RNASELQ05823 741 aaKnown RBP14.05□□□□□ -0.16
CHD3-210ENST00000479080 CCDC173Q0VFZ6 552 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 RAPGEF1Q13905 1077 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 TRIM14Q14142 442 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 WDR44Q5JSH3 913 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 WDR59Q6PJI9 974 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 DCLRE1AQ6PJP8 1040 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 RNF168Q8IYW5 571 aaPredicted RBP14.05□□□□□ -0.16
CHD3-210ENST00000479080 RSPH1Q8WYR4 309 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 DDX27Q96GQ7 796 aaKnown RBP14.05□□□□□ -0.16
CHD3-210ENST00000479080 SENP8Q96LD8 212 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 NUP58Q9BVL2 599 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 STK33Q9BYT3 514 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 ACP6Q9NPH0 428 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 IMPACTQ9P2X3 320 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 CNTN6Q9UQ52 1028 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 SNX9Q9Y5X1 595 aa14.05□□□□□ -0.16
CHD3-210ENST00000479080 M0QZQ0 153 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms