RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.01□□□□□ -0.33
PTPRF-212ENST00000477970 ANKFY1Q9P2R3 1169 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 RBPJLQ9UBG7 517 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 FEZ2Q9UHY8 353 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-212ENST00000477970 PCDHGC3Q9UN70 934 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 SORBS3O60504 671 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 B4GALT4O60513 344 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 MAMLD1Q13495 774 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 PTK6Q13882 451 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 MAPK6Q16659 721 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 SGSM1Q2NKQ1 1148 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 LMBRD2Q68DH5 695 aaPredicted RBP13□□□□□ -0.33
PTPRF-212ENST00000477970 SH2D3CQ8N5H7 860 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 GADD45GIP1Q8TAE8 222 aaPredicted RBP13□□□□□ -0.33
PTPRF-212ENST00000477970 PGM2Q96G03 612 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 TSPYL1Q9H0U9 437 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 ARIH2O95376 493 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 ECEL1O95672 775 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 PRKCBP05771 671 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 TM4SF4P48230 202 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 CAV1Q03135 178 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 TAP1Q03518 808 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 KLF1Q13351 362 aaPredicted RBP13□□□□□ -0.33
PTPRF-212ENST00000477970 PRKG1Q13976 671 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 FAM187BQ17R55 369 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 LY6KQ17RY6 165 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 LRRC38Q5VT99 294 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 SPOPLQ6IQ16 392 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 IFNLR1Q8IU57 520 aaPredicted RBP13□□□□□ -0.33
PTPRF-212ENST00000477970 RHOT1Q8IXI2 618 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 CPA5Q8WXQ8 436 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 ZBTB9Q96C00 473 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 EPN3Q9H201 632 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 SMARCAD1Q9H4L7 1026 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 ELP3Q9H9T3 547 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 PARVAQ9NVD7 372 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 SLC12A6Q9UHW9 1150 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 GGA2Q9UJY4 613 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 TCRBV5S1A1TA0A578 114 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 ACKR2O00590 384 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 RARGP13631 454 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 MMP8P22894 467 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 PTPN7P35236 360 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 SPRYD7Q5W111 196 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 TMEM270Q6UE05 265 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 MPZL3Q6UWV2 235 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 EXD1Q8NHP7 514 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 MMP19Q99542 508 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 NIF3L1Q9GZT8 377 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 FAM124BQ9H5Z6 455 aaPredicted RBP13□□□□□ -0.33
PTPRF-212ENST00000477970 ADAM22Q9P0K1 906 aa13□□□□□ -0.33
PTPRF-212ENST00000477970 CHORDC1Q9UHD1 332 aaPredicted RBP13□□□□□ -0.33
PTPRF-212ENST00000477970 TCRBV7S2A1N4TA0A589 114 aa12.99□□□□□ -0.33
PTPRF-212ENST00000477970 HBP1O60381 514 aa12.99□□□□□ -0.33
PTPRF-212ENST00000477970 CALB1P05937 261 aa12.99□□□□□ -0.33
PTPRF-212ENST00000477970 GSCP56915 257 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-212ENST00000477970 YWHAEP62258 255 aaKnown RBP12.99□□□□□ -0.33
PTPRF-212ENST00000477970 DUOXA2Q1HG44 320 aa12.99□□□□□ -0.33
PTPRF-212ENST00000477970 KCTD16Q68DU8 428 aa12.99□□□□□ -0.33
PTPRF-212ENST00000477970 MOB2Q70IA6 237 aa12.99□□□□□ -0.33
PTPRF-212ENST00000477970 CPNE8Q86YQ8 564 aa12.99□□□□□ -0.33
PTPRF-212ENST00000477970 FBXO25Q8TCJ0 367 aa12.99□□□□□ -0.33
PTPRF-212ENST00000477970 CNOT10Q9H9A5 744 aaKnown RBP12.99□□□□□ -0.33
PTPRF-212ENST00000477970 SNX24Q9Y343 169 aa12.99□□□□□ -0.33
PTPRF-212ENST00000477970 PLXNA1Q9UIW2 1896 aa12.99□□□□□ -0.33
PTPRF-212ENST00000477970 IL18RAPO95256 599 aa12.99□□□□□ -0.33
PTPRF-212ENST00000477970 LSP1P33241 339 aa12.99□□□□□ -0.33
PTPRF-212ENST00000477970 INHBEP58166 350 aa12.99□□□□□ -0.33
PTPRF-212ENST00000477970 DRP2Q13474 957 aa12.99□□□□□ -0.33
PTPRF-212ENST00000477970 KCTD2Q14681 263 aa12.99□□□□□ -0.33
PTPRF-212ENST00000477970 DNAJC21Q5F1R6 531 aaKnown RBP12.99□□□□□ -0.33
PTPRF-212ENST00000477970 ADAT2Q7Z6V5 191 aaKnown RBP12.99□□□□□ -0.33
PTPRF-212ENST00000477970 CCDC105Q8IYK2 499 aa12.99□□□□□ -0.33
PTPRF-212ENST00000477970 OTUD5Q96G74 571 aa12.99□□□□□ -0.33
PTPRF-212ENST00000477970 IP6K2Q9UHH9 426 aa12.99□□□□□ -0.33
PTPRF-212ENST00000477970 ASB14A6NK59 587 aa12.98□□□□□ -0.33
PTPRF-212ENST00000477970 HOXC6P09630 235 aa12.98□□□□□ -0.33
PTPRF-212ENST00000477970 ITIH2P19823 946 aa12.98□□□□□ -0.33
PTPRF-212ENST00000477970 TTLL12Q14166 644 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-212ENST00000477970 SGO2Q562F6 1265 aa12.98□□□□□ -0.33
PTPRF-212ENST00000477970 GPAT2Q6NUI2 795 aa12.98□□□□□ -0.33
PTPRF-212ENST00000477970 RHBDF2Q6PJF5 856 aa12.98□□□□□ -0.33
PTPRF-212ENST00000477970 TRMT10CQ7L0Y3 403 aaKnown RBP12.98□□□□□ -0.33
PTPRF-212ENST00000477970 NIPA2Q8N8Q9 360 aa12.98□□□□□ -0.33
PTPRF-212ENST00000477970 FEZF2Q8TBJ5 459 aa12.98□□□□□ -0.33
PTPRF-212ENST00000477970 ZNF606Q8WXB4 792 aa12.98□□□□□ -0.33
PTPRF-212ENST00000477970 CENPTQ96BT3 561 aa12.98□□□□□ -0.33
PTPRF-212ENST00000477970 DCLK3Q9C098 648 aa12.98□□□□□ -0.33
PTPRF-212ENST00000477970 TNFSF13BQ9Y275 285 aa12.98□□□□□ -0.33
PTPRF-212ENST00000477970 ATP8A1Q9Y2Q0 1164 aa12.98□□□□□ -0.33
PTPRF-212ENST00000477970 NEU2Q9Y3R4 380 aa12.98□□□□□ -0.33
PTPRF-212ENST00000477970 PLXNB2O15031 1838 aa12.98□□□□□ -0.33
PTPRF-212ENST00000477970 COL1A2P08123 1366 aa12.98□□□□□ -0.33
PTPRF-212ENST00000477970 AOC2O75106 756 aa12.98□□□□□ -0.33
PTPRF-212ENST00000477970 HSPA1AP0DMV8 641 aaKnown RBP12.98□□□□□ -0.33
PTPRF-212ENST00000477970 HSPA1BP0DMV9 641 aaKnown RBP12.98□□□□□ -0.33
PTPRF-212ENST00000477970 EIF4BP23588 611 aaKnown RBP12.98□□□□□ -0.33
PTPRF-212ENST00000477970 PPP2R2AP63151 447 aa12.98□□□□□ -0.33
PTPRF-212ENST00000477970 BYSLQ13895 437 aaKnown RBP12.98□□□□□ -0.33
PTPRF-212ENST00000477970 CCNG2Q16589 344 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms