RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 PARVGQ9HBI0 331 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 CPSF3Q9UKF6 684 aaKnown RBP13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 UBQLN1Q9UMX0 589 aaKnown RBP13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 SMC3Q9UQE7 1217 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 STYXL1Q9Y6J8 313 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 ANO9A1A5B4 782 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ZNF197O14709 1029 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 TRAK2O60296 914 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 BMP15O95972 392 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 PLCG1P19174 1290 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 DDIT3P35638 169 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 UBA7P41226 1012 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ARPP19P56211 112 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 LILRA4P59901 499 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 GPR17Q13304 367 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 MCM6Q14566 821 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 PTPAQ15257 358 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ZNF528Q3MIS6 628 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 FAM78AQ5JUQ0 283 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 SPECC1Q5M775 1068 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 MAP4K3Q8IVH8 894 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 HS6ST3Q8IZP7 471 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 NELL1Q92832 810 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 KIF12Q96FN5 646 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 CALML4Q96GE6 196 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ZSWIM3Q96MP5 696 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 CORO1BQ9BR76 489 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 STRA6Q9BX79 667 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 CRISPLD1Q9H336 500 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 LTB4R2Q9NPC1 389 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 TRPV5Q9NQA5 729 aa13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.33□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 FAM170BA6NMN3 283 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 PIRO00625 290 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 PPEF2O14830 753 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 LMNAP02545 664 aaKnown RBP13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 TYMPP19971 482 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 CD72P21854 359 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 MARCKSP29966 332 aaPredicted RBP13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 RPS9P46781 194 aaKnown RBP13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 LIG4P49917 911 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 GUCY2FP51841 1108 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 POU5F1Q01860 360 aaKnown RBP13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 YWHAHQ04917 246 aaPredicted RBP13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 TWF1Q12792 350 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 KARSQ15046 597 aaKnown RBP13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 SF3A1Q15459 793 aaKnown RBP13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 MAMSTRQ6ZN01 415 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 USP49Q70CQ1 688 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 CD302Q8IX05 232 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 MYCT1Q8N699 235 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 SUMF1Q8NBK3 374 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 LEMD2Q8NC56 503 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 DNASE1L2Q92874 299 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 BORCS6Q96GS4 357 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 NELL2Q99435 816 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 DNAJC25Q9H1X3 360 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 TIMM13Q9Y5L4 95 aaPredicted RBP13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 R4GN57 208 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 TSC2P49815 1807 aa13.32□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 DENND4CQ5VZ89 1909 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 OR6C75A6NL08 312 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ANKRD63C9JTQ0 380 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ARNTLO00327 626 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 HNRNPDLO14979 420 aaKnown RBP13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 SPTLC1O15269 473 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 PPP1R37O75864 691 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 FAM13AO94988 1023 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 CYP11A1P05108 521 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 RFX1P22670 979 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 PAX3P23760 479 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 TARSP26639 723 aaKnown RBP13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 NMT1P30419 496 aaKnown RBP13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ABCD1P33897 745 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 MAGEA9P43362 315 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 PPP2R3AQ06190 1150 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 MYBPC2Q14324 1141 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 JADE1Q6IE81 842 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 CENPPQ6IPU0 288 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 CRELD2Q6UXH1 353 aaPredicted RBP13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 VITQ6UXI7 678 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 PDZD4Q76G19 769 aaPredicted RBP13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ZNF720Q7Z2F6 126 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 TMC8Q8IU68 726 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 LARP4BQ92615 738 aaKnown RBP13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 SMARCD2Q92925 531 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 EPSTI1Q96J88 318 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ZNF512Q96ME7 567 aaPredicted RBP13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 RPF1Q9H9Y2 349 aaKnown RBP13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ZFP14Q9HCL3 533 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 HEBP1Q9NRV9 189 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 HSFX1Q9UBD0 423 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 FBXO4Q9UKT5 387 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 DERAQ9Y315 318 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 MORC2Q9Y6X9 1032 aaPredicted RBP13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 NCANO14594 1321 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 TICRRQ7Z2Z1 1910 aa13.31□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 K7ENM7 598 aa13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 XPOTO43592 962 aaKnown RBP13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ADSSP30520 456 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms