RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 GAP43P17677 238 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 TXLNAP40222 546 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 CLCN5P51795 746 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 PTPN5P54829 565 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 LILRA4P59901 499 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 L1TD1Q5T7N2 865 aaKnown RBP15.31■□□□□ 0.04
UPF3A-204ENST00000475218 TPGS2Q68CL5 300 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 ZNF280DQ6N043 979 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 SHC4Q6S5L8 630 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 APPL2Q8NEU8 664 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 GPR152Q8TDT2 470 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 HPS3Q969F9 1004 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 TCEAL4Q96EI5 215 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 TSPAN18Q96SJ8 248 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 MRPL44Q9H9J2 332 aaKnown RBP15.31■□□□□ 0.04
UPF3A-204ENST00000475218 CYP4F11Q9HBI6 524 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 AVENQ9NQS1 362 aaPredicted RBP15.31■□□□□ 0.04
UPF3A-204ENST00000475218 CEP72Q9P209 647 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 WNT16Q9UBV4 365 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 KCNH3Q9ULD8 1083 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 ZFP37Q9Y6Q3 630 aaPredicted RBP15.31■□□□□ 0.04
UPF3A-204ENST00000475218 DMDP11532 3685 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 GALR2O43603 387 aaPredicted RBP15.3■□□□□ 0.04
UPF3A-204ENST00000475218 PPP6R2O75170 966 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 CEBPBP17676 345 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 ABCD1P33897 745 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 MRE11P49959 708 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 ADCY1Q08828 1119 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 TMEM132DQ14C87 1099 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 STK38Q15208 465 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 SLFN12LQ6IEE8 588 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 CD302Q8IX05 232 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 FLCNQ8NFG4 579 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 BORCS6Q96GS4 357 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 FAM84AQ96KN4 292 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 TMEM209Q96SK2 561 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 ASB7Q9H672 318 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 SLC2A4RGQ9NR83 387 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 FAM86C1Q9NVL1 165 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 AFF4Q9UHB7 1163 aaKnown RBP15.3■□□□□ 0.04
UPF3A-204ENST00000475218 DERAQ9Y315 318 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 CFAP54Q96N23 3096 aa15.3■□□□□ 0.04
UPF3A-204ENST00000475218 PRRG1O14668 218 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 MOSPD3O75425 235 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 YEATS4O95619 227 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 AOC1P19801 751 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 HOXD13P35453 343 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 YWHAHQ04917 246 aaPredicted RBP15.29■□□□□ 0.04
UPF3A-204ENST00000475218 HS6ST3Q8IZP7 471 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 TTC9BQ8N6N2 239 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 SENP8Q96LD8 212 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 PRRX2Q99811 253 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 RTP3Q9BQQ7 232 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 KBTBD4Q9NVX7 518 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 FBXL21Q9UKT6 434 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 CA14Q9ULX7 337 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 C2CD2Q9Y426 696 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 FRYLO94915 3013 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 H0Y858 1186 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 GCNT3O95395 438 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 ZSCAN22P10073 491 aaPredicted RBP15.29■□□□□ 0.04
UPF3A-204ENST00000475218 IDEP14735 1019 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 FCARP24071 287 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 GPC5P78333 572 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 FOXD4L6Q3SYB3 417 aaPredicted RBP15.29■□□□□ 0.04
UPF3A-204ENST00000475218 FOXD4L3Q6VB84 417 aaPredicted RBP15.29■□□□□ 0.04
UPF3A-204ENST00000475218 OR10T2Q8NGX3 314 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 CXorf38Q8TB03 319 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 POMGNT1Q8WZA1 660 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 SAAL1Q96ER3 474 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 KXD1Q9BQD3 176 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 PLA2G2FQ9BZM2 168 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 MFSD1Q9H3U5 465 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 PANK4Q9NVE7 773 aa15.29■□□□□ 0.04
UPF3A-204ENST00000475218 MRPS23Q9Y3D9 190 aaKnown RBP15.29■□□□□ 0.04
UPF3A-204ENST00000475218 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.29■□□□□ 0.04
UPF3A-204ENST00000475218 XPOTO43592 962 aaKnown RBP15.28■□□□□ 0.04
UPF3A-204ENST00000475218 F13A1P00488 732 aa15.28■□□□□ 0.04
UPF3A-204ENST00000475218 CYP11A1P05108 521 aa15.28■□□□□ 0.04
UPF3A-204ENST00000475218 PTPN2P17706 415 aa15.28■□□□□ 0.04
UPF3A-204ENST00000475218 TYMPP19971 482 aa15.28■□□□□ 0.04
UPF3A-204ENST00000475218 ELF1P32519 619 aa15.28■□□□□ 0.04
UPF3A-204ENST00000475218 POU5F1Q01860 360 aaKnown RBP15.28■□□□□ 0.04
UPF3A-204ENST00000475218 TWF1Q12792 350 aa15.28■□□□□ 0.04
UPF3A-204ENST00000475218 DSTYKQ6XUX3 929 aa15.28■□□□□ 0.04
UPF3A-204ENST00000475218 MCRS1Q96EZ8 462 aa15.28■□□□□ 0.04
UPF3A-204ENST00000475218 PGLYRP2Q96PD5 576 aa15.28■□□□□ 0.04
UPF3A-204ENST00000475218 ACCSQ96QU6 501 aa15.28■□□□□ 0.04
UPF3A-204ENST00000475218 CORO1BQ9BR76 489 aa15.28■□□□□ 0.04
UPF3A-204ENST00000475218 CBWD1Q9BRT8 395 aa15.28■□□□□ 0.04
UPF3A-204ENST00000475218 FAM213AQ9BRX8 229 aa15.28■□□□□ 0.04
UPF3A-204ENST00000475218 LRRC3Q9BY71 257 aa15.28■□□□□ 0.04
UPF3A-204ENST00000475218 TRIM9Q9C026 710 aa15.28■□□□□ 0.04
UPF3A-204ENST00000475218 DNAJC25Q9H1X3 360 aa15.28■□□□□ 0.04
UPF3A-204ENST00000475218 YIPF1Q9Y548 306 aa15.28■□□□□ 0.04
UPF3A-204ENST00000475218 CUTAO60888 179 aa15.27■□□□□ 0.04
UPF3A-204ENST00000475218 PRPF6O94906 941 aaKnown RBP15.27■□□□□ 0.04
UPF3A-204ENST00000475218 LRG1P02750 347 aa15.27■□□□□ 0.04
UPF3A-204ENST00000475218 CPB1P15086 417 aa15.27■□□□□ 0.04
UPF3A-204ENST00000475218 NUBP1P53384 320 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms