RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 H3BRB1 525 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 GOLGA8RI6L899 631 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 TOM1L1O75674 476 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 STAG3L1P0CL83 205 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 ACOT1Q86TX2 421 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 MCOLN2Q8IZK6 566 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 PRELID2Q8N945 189 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 TUT1Q9H6E5 874 aaKnown RBP14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 PIH1D1Q9NWS0 290 aaKnown RBP14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 PASKQ96RG2 1323 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 H0YCG3 227 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 CAND2O75155 1236 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 C6orf222P0C671 652 aaPredicted RBP14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 KRT15P19012 456 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 IRAK1P51617 712 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 CCNA1P78396 465 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 TXNRD3NBQ6F5E7 133 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 TTC27Q6P3X3 843 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 B3GNT9Q6UX72 402 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 LRRC31Q6UY01 552 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 RIOX2Q8IUF8 465 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 HASPINQ8TF76 798 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 SCFD2Q8WU76 684 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 ERP44Q9BS26 406 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 GTF3C4Q9UKN8 822 aa14.58□□□□□ -0.08
CCDC88A-211ENST00000471947 CCDC188H7C350 402 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 CLTAP09496 248 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 PMS2P54278 862 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 SMARCAD1Q9H4L7 1026 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 SNTG2Q9NY99 539 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 SEPT10Q9P0V9 454 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 HMGXB4Q9UGU5 601 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 MYO9BQ13459 2157 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 KAT6AQ92794 2004 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 LACTBL1A8MY62 500 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 VNN1O95497 513 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 LDHAP00338 332 aaKnown RBP14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 LCP1P13796 627 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 BPIFB4P59827 614 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 GPS1Q13098 491 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 KIF22Q14807 665 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 TMED2Q15363 201 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 BBS9Q3SYG4 887 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 TWF2Q6IBS0 349 aaKnown RBP14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 CCDC89Q8N998 374 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 KCTD6Q8NC69 237 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 TMEM35BQ8NCS4 154 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 REPS2Q8NFH8 660 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 METTL5Q9NRN9 209 aaKnown RBP14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 MYPNQ86TC9 1320 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 GOLGA8KD6RF30 607 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 H7C0C1 242 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 SPAG7O75391 227 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 ATP5OP48047 213 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 IFI35P80217 286 aaPredicted RBP14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 CLEC16AQ2KHT3 1053 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 ZACNQ401N2 412 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 JADE1Q6IE81 842 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 CTAGE3PQ8IX95 158 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 WHAMMQ8TF30 809 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 TMEM121Q9BTD3 319 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 SAYSD1Q9NPB0 183 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 ARHGAP28Q9P2N2 729 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 RRP15Q9Y3B9 282 aaKnown RBP14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 MAST2Q6P0Q8 1798 aa14.57□□□□□ -0.08
CCDC88A-211ENST00000471947 CCDC78A2IDD5 438 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 GPR25O00155 361 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 OGTO15294 1046 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 PRLRP16471 622 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 ZNF157P51786 506 aaPredicted RBP14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 DENND1BQ6P3S1 775 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 FAM47EQ6ZV65 393 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 HOOK3Q86VS8 718 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 SRRM1Q8IYB3 904 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 GPR20Q99678 358 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 LBHD1Q9BQE6 289 aaPredicted RBP14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 OSBPL8Q9BZF1 889 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 ISCUQ9H1K1 167 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 ERAP1Q9NZ08 941 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 NOCTQ9UK39 431 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 ABT1Q9ULW3 272 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 NOD1Q9Y239 953 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 DDX3YO15523 660 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 KRT3P12035 628 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 ACAT1P24752 427 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 TAF1CQ15572 869 aaPredicted RBP14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 FASTKD5Q7L8L6 764 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 SLC9A9Q8IVB4 645 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 SAMD3Q8N6K7 520 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 TFAP2BQ92481 460 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 FAM114A2Q9NRY5 505 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 VGLL3A8MV65 326 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 LGALS2P05162 132 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 GARTP22102 1010 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 CHADLQ6NUI6 762 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 OTUD6BQ8N6M0 293 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 DNAJB3Q8WWF6 145 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 RSAD2Q8WXG1 361 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 NDRG1Q92597 394 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 SYNPO2Q9UMS6 1093 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms