RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 MEFVO15553 781 aaPredicted RBP20.3■□□□□ 0.84
VIM-203ENST00000469543 STAM2O75886 525 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 RARGP13631 454 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 ICAM3P32942 547 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 ADCY8P40145 1251 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 FNTAP49354 379 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 TMEM192Q8IY95 271 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 DCLK3Q9C098 648 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 TJP2Q9UDY2 1190 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 FAM189A1O60320 539 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 TFAMQ00059 246 aaKnown RBP20.3■□□□□ 0.84
VIM-203ENST00000469543 AUHQ13825 339 aaKnown RBP20.3■□□□□ 0.84
VIM-203ENST00000469543 BYSLQ13895 437 aaKnown RBP20.3■□□□□ 0.84
VIM-203ENST00000469543 LRRC14Q15048 493 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 CYP4A22Q5TCH4 519 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 B4GALNT4Q76KP1 1039 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 SPATC1LQ9H0A9 340 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 ELP3Q9H9T3 547 aa20.3■□□□□ 0.84
VIM-203ENST00000469543 A0A087WUV0 522 aaPredicted RBP20.29■□□□□ 0.84
VIM-203ENST00000469543 ATP2C2O75185 946 aa20.29■□□□□ 0.84
VIM-203ENST00000469543 ZSCAN5DPP0CG00 497 aa20.29■□□□□ 0.84
VIM-203ENST00000469543 SLFN12LQ6IEE8 588 aa20.29■□□□□ 0.84
VIM-203ENST00000469543 RHPN2Q8IUC4 686 aa20.29■□□□□ 0.84
VIM-203ENST00000469543 OTUD6BQ8N6M0 293 aa20.29■□□□□ 0.84
VIM-203ENST00000469543 C12orf50Q8NA57 414 aaPredicted RBP20.29■□□□□ 0.84
VIM-203ENST00000469543 TFAP2BQ92481 460 aa20.29■□□□□ 0.84
VIM-203ENST00000469543 HAUS1Q96CS2 278 aa20.29■□□□□ 0.84
VIM-203ENST00000469543 CGRRF1Q99675 332 aa20.29■□□□□ 0.84
VIM-203ENST00000469543 AVENQ9NQS1 362 aaPredicted RBP20.29■□□□□ 0.84
VIM-203ENST00000469543 RASGRF2O14827 1237 aa20.29■□□□□ 0.84
VIM-203ENST00000469543 ETS1P14921 441 aa20.29■□□□□ 0.84
VIM-203ENST00000469543 OGDHQ02218 1023 aa20.29■□□□□ 0.84
VIM-203ENST00000469543 ZNF252P-AS1Q0IIN9 211 aa20.29■□□□□ 0.84
VIM-203ENST00000469543 KLF1Q13351 362 aaPredicted RBP20.29■□□□□ 0.84
VIM-203ENST00000469543 WDR78Q5VTH9 848 aa20.29■□□□□ 0.84
VIM-203ENST00000469543 CHST13Q8NET6 341 aa20.29■□□□□ 0.84
VIM-203ENST00000469543 PRMT1Q99873 361 aaKnown RBP20.29■□□□□ 0.84
VIM-203ENST00000469543 JPH2Q9BR39 696 aaPredicted RBP20.29■□□□□ 0.84
VIM-203ENST00000469543 BRCA1P38398 1863 aaKnown RBP20.28■□□□□ 0.84
VIM-203ENST00000469543 H0YCG3 227 aa20.28■□□□□ 0.84
VIM-203ENST00000469543 BPIFB4P59827 614 aa20.28■□□□□ 0.84
VIM-203ENST00000469543 LAMTOR4Q0VGL1 99 aa20.28■□□□□ 0.84
VIM-203ENST00000469543 HOOK3Q86VS8 718 aa20.28■□□□□ 0.84
VIM-203ENST00000469543 MGARPQ8TDB4 240 aa20.28■□□□□ 0.84
VIM-203ENST00000469543 PPM1EQ8WY54 764 aa20.28■□□□□ 0.84
VIM-203ENST00000469543 NLRP4Q96MN2 994 aa20.28■□□□□ 0.84
VIM-203ENST00000469543 OSBPL8Q9BZF1 889 aa20.28■□□□□ 0.84
VIM-203ENST00000469543 C10orf88Q9H8K7 445 aa20.28■□□□□ 0.84
VIM-203ENST00000469543 NRBP2Q9NSY0 501 aa20.28■□□□□ 0.84
VIM-203ENST00000469543 SAE1Q9UBE0 346 aaPredicted RBP20.28■□□□□ 0.84
VIM-203ENST00000469543 TBK1Q9UHD2 729 aa20.28■□□□□ 0.84
VIM-203ENST00000469543 ZBTB42B2RXF5 422 aa20.28■□□□□ 0.84
VIM-203ENST00000469543 ATF7P17544 494 aaPredicted RBP20.28■□□□□ 0.84
VIM-203ENST00000469543 GJC2Q5T442 439 aaPredicted RBP20.28■□□□□ 0.84
VIM-203ENST00000469543 WDTC1Q8N5D0 677 aa20.28■□□□□ 0.84
VIM-203ENST00000469543 MCEEQ96PE7 176 aa20.28■□□□□ 0.84
VIM-203ENST00000469543 FHDC1Q9C0D6 1143 aaPredicted RBP20.28■□□□□ 0.84
VIM-203ENST00000469543 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.28■□□□□ 0.84
VIM-203ENST00000469543 CAPN7Q9Y6W3 813 aa20.28■□□□□ 0.84
VIM-203ENST00000469543 IVNS1ABPQ9Y6Y0 642 aa20.28■□□□□ 0.84
VIM-203ENST00000469543 MAFO75444 373 aaPredicted RBP20.27■□□□□ 0.84
VIM-203ENST00000469543 PIGRP01833 764 aa20.27■□□□□ 0.84
VIM-203ENST00000469543 IQCF3P0C7M6 154 aa20.27■□□□□ 0.84
VIM-203ENST00000469543 RAP1GAPP47736 663 aa20.27■□□□□ 0.84
VIM-203ENST00000469543 CPLX4Q7Z7G2 160 aa20.27■□□□□ 0.84
VIM-203ENST00000469543 ZNF677Q86XU0 584 aa20.27■□□□□ 0.84
VIM-203ENST00000469543 PGM2Q96G03 612 aa20.27■□□□□ 0.84
VIM-203ENST00000469543 C9orf72Q96LT7 481 aa20.27■□□□□ 0.84
VIM-203ENST00000469543 XPO6Q96QU8 1125 aaKnown RBP20.27■□□□□ 0.84
VIM-203ENST00000469543 MINDY3Q9H8M7 445 aa20.27■□□□□ 0.84
VIM-203ENST00000469543 PDGFCQ9NRA1 345 aa20.27■□□□□ 0.84
VIM-203ENST00000469543 CISHQ9NSE2 258 aa20.27■□□□□ 0.84
VIM-203ENST00000469543 NXF1Q9UBU9 619 aaKnown RBP20.27■□□□□ 0.84
VIM-203ENST00000469543 MMP13P45452 471 aa20.27■□□□□ 0.83
VIM-203ENST00000469543 ERMARDQ5T6L9 678 aa20.27■□□□□ 0.83
VIM-203ENST00000469543 PLEKHA7Q6IQ23 1121 aa20.27■□□□□ 0.83
VIM-203ENST00000469543 EXOC3L1Q86VI1 746 aa20.27■□□□□ 0.83
VIM-203ENST00000469543 FBXO16Q8IX29 292 aaPredicted RBP20.27■□□□□ 0.83
VIM-203ENST00000469543 SEPT1Q8WYJ6 367 aa20.27■□□□□ 0.83
VIM-203ENST00000469543 SEC16BQ96JE7 1060 aa20.27■□□□□ 0.83
VIM-203ENST00000469543 ADAM33Q9BZ11 813 aa20.27■□□□□ 0.83
VIM-203ENST00000469543 PARP2Q9UGN5 583 aa20.27■□□□□ 0.83
VIM-203ENST00000469543 LDHAP00338 332 aaKnown RBP20.26■□□□□ 0.83
VIM-203ENST00000469543 CDH8P55286 799 aa20.26■□□□□ 0.83
VIM-203ENST00000469543 SLMAPQ14BN4 828 aa20.26■□□□□ 0.83
VIM-203ENST00000469543 SH3D19Q5HYK7 790 aa20.26■□□□□ 0.83
VIM-203ENST00000469543 RHBDF2Q6PJF5 856 aa20.26■□□□□ 0.83
VIM-203ENST00000469543 RHOT1Q8IXI2 618 aa20.26■□□□□ 0.83
VIM-203ENST00000469543 SCLT1Q96NL6 688 aa20.26■□□□□ 0.83
VIM-203ENST00000469543 PLVAPQ9BX97 442 aa20.26■□□□□ 0.83
VIM-203ENST00000469543 VGLL3A8MV65 326 aa20.26■□□□□ 0.83
VIM-203ENST00000469543 ASS1P00966 412 aaKnown RBP20.26■□□□□ 0.83
VIM-203ENST00000469543 SLC1A1P43005 524 aa20.26■□□□□ 0.83
VIM-203ENST00000469543 MTM1Q13496 603 aa20.26■□□□□ 0.83
VIM-203ENST00000469543 LIN9Q5TKA1 542 aa20.26■□□□□ 0.83
VIM-203ENST00000469543 C6orf89Q6UWU4 347 aa20.26■□□□□ 0.83
VIM-203ENST00000469543 CYP4X1Q8N118 509 aa20.26■□□□□ 0.83
VIM-203ENST00000469543 FEZF2Q8TBJ5 459 aa20.26■□□□□ 0.83
VIM-203ENST00000469543 OSBPL7Q9BZF2 842 aa20.26■□□□□ 0.83
VIM-203ENST00000469543 POLIQ9UNA4 740 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms