RNA–Protein interactions for RNA: ENST00000463428.5

PHACTR4-203, Transcript of phosphatase and actin regulator 4, humanhuman

TSL 1 (best)

Gene PHACTR4, Length 1,421 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHACTR4-203ENST00000463428 TRIM65Q6PJ69 517 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 LIMS2Q7Z4I7 341 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 SPRED2Q7Z698 418 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 ZNF558Q96NG5 402 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 GDAP2Q9NXN4 497 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 A0A1W2PPC1 479 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 CBFA2T2O43439 604 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 NOL4O94818 638 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 CA3P07451 260 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 PAX3P23760 479 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 BMPR1AP36894 532 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 ZNF75DP51815 510 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 NOP14P78316 857 aaKnown RBP14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 TAP1Q03518 808 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 LRMPQ12912 555 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 MYO1EQ12965 1108 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 ZNF699Q32M78 642 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 SV2CQ496J9 727 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 SPOUT1Q5T280 376 aaKnown RBP14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 ARHGEF19Q8IW93 802 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 RNF168Q8IYW5 571 aaPredicted RBP14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 HASPINQ8TF76 798 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 IGSF21Q96ID5 467 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 FAXDC2Q96IV6 333 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 SUSD3Q96L08 255 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 ZNF560Q96MR9 790 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 VN1R3Q9BXE9 311 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 GPR62Q9BZJ7 368 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 TRIM5Q9C035 493 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 PLCB1Q9NQ66 1216 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.92□□□□□ -0.021e-6■■■■■ 76
PHACTR4-203ENST00000463428 ADAM28Q9UKQ2 775 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 POLIQ9UNA4 740 aa14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 COLQQ9Y215 455 aaPredicted RBP14.92□□□□□ -0.02
PHACTR4-203ENST00000463428 CARNS1A5YM72 827 aa14.91□□□□□ -0.02
PHACTR4-203ENST00000463428 M0QZQ0 153 aa14.91□□□□□ -0.02
PHACTR4-203ENST00000463428 EPHB6O15197 1021 aa14.91□□□□□ -0.02
PHACTR4-203ENST00000463428 SMAD3P84022 425 aaKnown RBP14.91□□□□□ -0.02
PHACTR4-203ENST00000463428 RAB30Q15771 203 aa14.91□□□□□ -0.02
PHACTR4-203ENST00000463428 WDR72Q3MJ13 1102 aa14.91□□□□□ -0.02
PHACTR4-203ENST00000463428 ZNF667Q5HYK9 610 aa14.91□□□□□ -0.02
PHACTR4-203ENST00000463428 WDR44Q5JSH3 913 aa14.91□□□□□ -0.02
PHACTR4-203ENST00000463428 KLHDC7AQ5VTJ3 777 aa14.91□□□□□ -0.02
PHACTR4-203ENST00000463428 GJB7Q6PEY0 223 aa14.91□□□□□ -0.02
PHACTR4-203ENST00000463428 SENP8Q96LD8 212 aa14.91□□□□□ -0.02
PHACTR4-203ENST00000463428 C17orf80Q9BSJ5 609 aa14.91□□□□□ -0.02
PHACTR4-203ENST00000463428 LSM14BQ9BX40 385 aaKnown RBP14.91□□□□□ -0.02
PHACTR4-203ENST00000463428 GANQ9H2C0 597 aa14.91□□□□□ -0.02
PHACTR4-203ENST00000463428 PLXNA4Q9HCM2 1894 aa14.91□□□□□ -0.02
PHACTR4-203ENST00000463428 SPG21Q9NZD8 308 aa14.91□□□□□ -0.02
PHACTR4-203ENST00000463428 R3HCC1Q9Y3T6 440 aaKnown RBP14.91□□□□□ -0.02
PHACTR4-203ENST00000463428 C5orf67F2Z3F1 127 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 I3L4J1 428 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 TADA2AO75478 443 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 ASPAP45381 313 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 ERVK-21P61565 698 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 PLCB3Q01970 1234 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 SOWAHAQ2M3V2 549 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 LRIT3Q3SXY7 679 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 FUT10Q6P4F1 479 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 DPH6Q7L8W6 267 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 KAT5Q92993 513 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 MRFAP1L1Q96HT8 127 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 KREMEN1Q96MU8 473 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 NT5C1BQ96P26 610 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 NAA15Q9BXJ9 866 aaKnown RBP14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 BCO2Q9BYV7 579 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 IMPG2Q9BZV3 1241 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 NIF3L1Q9GZT8 377 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 SDCBP2Q9H190 292 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 NKX2-4Q9H2Z4 354 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 AAASQ9NRG9 546 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 NXF1Q9UBU9 619 aaKnown RBP14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 APEX2Q9UBZ4 518 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 MSRAQ9UJ68 235 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 AJAP1Q9UKB5 411 aaPredicted RBP14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 RWDD3Q9Y3V2 267 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 PCDHB12Q9Y5F1 795 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 SNX9Q9Y5X1 595 aa14.9□□□□□ -0.02
PHACTR4-203ENST00000463428 TSC2P49815 1807 aa14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 CYB561D2O14569 222 aa14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 CYP11A1P05108 521 aa14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 FAM163BP0C2L3 166 aa14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 PPM1AP35813 382 aa14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 MRE11P49959 708 aa14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 GCNT1Q02742 428 aa14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 PRPF38BQ5VTL8 546 aaKnown RBP14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 TAS1R1Q7RTX1 841 aa14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 VSTM4Q8IW00 320 aa14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 TOP6BLQ8N6T0 577 aa14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 UBR7Q8N806 425 aa14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 KLHL23Q8NBE8 558 aa14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 CCDC150Q8NCX0 1101 aa14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 ARID3AQ99856 593 aa14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 PLVAPQ9BX97 442 aa14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 TTYH3Q9C0H2 523 aa14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 FAM207AQ9NSI2 230 aaPredicted RBP14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 FBXL5Q9UKA1 691 aa14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 L1RE1Q9UN81 338 aa14.89□□□□□ -0.03
PHACTR4-203ENST00000463428 ITIH6Q6UXX5 1313 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms